| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,595,761 | G→T | 12.0% | P279P (CCC→CCA) | arsB ← | arsenite/antimonite transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,595,761 | 0 | G | T | 12.0% | 239.9 / 12.9 | 75 | P279P (CCC→CCA) | arsB | arsenite/antimonite transporter |
| Reads supporting (aligned to +/- strand): ref base G (31/35); new base T (6/3); total (37/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.09e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.37e-01 | |||||||||||
GGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATC > Exported/2595701‑2595827 | ggCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACcgc < 1:2963143/71‑1 (MQ=255)ggCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACcgc < 1:4911483/71‑1 (MQ=255)ggCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACcgc < 1:2506876/71‑1 (MQ=255)ggCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACcgc < 1:4508988/71‑1 (MQ=255)ggCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACcgc < 1:736425/71‑1 (MQ=255) gcgcAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAgg > 1:4477667/1‑70 (MQ=255) gcgcAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGa > 1:4760159/1‑71 (MQ=255) gcgcAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGa > 1:4208516/1‑71 (MQ=255) cgcAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGAc > 1:3986230/1‑71 (MQ=255) tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCTAGGGGGCACCGCGCAGGACTTTACCCg > 1:1994388/1‑70 (MQ=255) tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAc < 1:1640059/52‑1 (MQ=255) tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAc < 1:4425164/52‑1 (MQ=255) tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAc < 1:1114187/52‑1 (MQ=255) tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAc < 1:1805366/52‑1 (MQ=255) tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAc < 1:1278359/52‑1 (MQ=255) tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAc < 1:1871839/52‑1 (MQ=255) tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAc < 1:3025739/52‑1 (MQ=255) tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAc < 1:5053945/52‑1 (MQ=255) tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTAccc > 1:3169769/1‑69 (MQ=255) tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCg > 1:302012/1‑70 (MQ=255) aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAgg > 1:2717454/1‑44 (MQ=255) aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAgg > 1:3203780/1‑44 (MQ=255) aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAgg > 1:3652204/1‑44 (MQ=255) aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAgg > 1:1564081/1‑44 (MQ=255) aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAgg > 1:728254/1‑44 (MQ=255) aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAgg > 1:1855670/1‑44 (MQ=255) aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAgg > 1:4245624/1‑44 (MQ=255) aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTa < 1:489454/70‑1 (MQ=255) aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTAt > 1:3996750/1‑71 (MQ=255) aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTAt > 1:1811029/1‑71 (MQ=255) aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTAt > 1:824228/1‑71 (MQ=255) aGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCg > 1:471589/1‑70 (MQ=255) aGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGc < 1:4850556/71‑1 (MQ=255) gATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCa < 1:5047097/71‑1 (MQ=255) tACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATg < 1:3809251/71‑1 (MQ=255) tACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATg < 1:3476054/71‑1 (MQ=255) tACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATg < 1:4321383/71‑1 (MQ=255) tACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGAAt < 1:196274/70‑1 (MQ=255) aCATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGa > 1:1059677/1‑71 (MQ=255) aCATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGa > 1:2745877/1‑71 (MQ=255) aTGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAcc > 1:2969399/1‑38 (MQ=255) aTGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAcc > 1:4496596/1‑38 (MQ=255) aTGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAcc > 1:1613584/1‑38 (MQ=255) aTGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAcc > 1:2365532/1‑38 (MQ=255) aTGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAcc > 1:565496/1‑38 (MQ=255) aTGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAcc > 1:2449413/1‑38 (MQ=255) aTGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAcc > 1:4860973/1‑38 (MQ=255) tGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTccg > 1:4369955/1‑52 (MQ=255) tGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGAcct > 1:2643713/1‑70 (MQ=255) tGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGAcct > 1:4590037/1‑70 (MQ=255) tGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGAcct > 1:3760988/1‑70 (MQ=255) tGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGAcct > 1:2363060/1‑70 (MQ=255) tGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGAcc > 1:2919275/1‑70 (MQ=255) gtgagaAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCttttc < 1:2800717/69‑2 (MQ=255) gtgagaAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCttttc < 1:3026550/69‑2 (MQ=255) gtgagaAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCttttc < 1:4383066/69‑2 (MQ=255) gagaAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCg < 1:1917654/55‑1 (MQ=255) gagaAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCg < 1:4328686/55‑1 (MQ=255) gagaAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGc < 1:1119414/71‑1 (MQ=255) agaagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTa < 1:2224188/50‑1 (MQ=255) agaagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTa < 1:786577/50‑1 (MQ=255) gaagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCa > 1:1095870/1‑55 (MQ=255) gaagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCa > 1:2173623/1‑55 (MQ=255) gaagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCa > 1:3299263/1‑55 (MQ=255) aagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACcgcg < 1:414333/62‑1 (MQ=255) aagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACcgcg < 1:3610010/62‑1 (MQ=255) aagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACcgcg < 1:3255475/62‑1 (MQ=255) aagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACcgcg < 1:2933304/62‑1 (MQ=255) aagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACcgcg < 1:5078090/62‑1 (MQ=255) aagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCCTATTAATCGCATGACcgcg < 1:728229/62‑1 (MQ=255) agaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTaa > 1:2548385/1‑48 (MQ=255) gaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGtt > 1:4425836/1‑62 (MQ=255) tGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACa < 1:3021015/71‑1 (MQ=255) gACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACa > 1:4341645/1‑70 (MQ=255) gACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACa > 1:1406680/1‑70 (MQ=255) gACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACa > 1:3648213/1‑70 (MQ=255) aCAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGa > 1:1650575/1‑51 (MQ=255) aCAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGAc > 1:5147509/1‑52 (MQ=255) aCAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACaa < 1:1789208/70‑1 (MQ=255) tGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGcgacga > 1:367128/1‑61 (MQ=255) ccAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCg < 1:2629714/38‑1 (MQ=255) ccAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATc < 1:2419454/70‑1 (MQ=255) | GGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATC > Exported/2595701‑2595827 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |