BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	Exported	1,763,556	T→C	33.8%	noncoding (288/1542 nt)	rrsG ←	16S ribosomal RNA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	Exported	1,763,556	0	T	C	33.8%	120.1 / 127.0	136	noncoding (288/1542 nt)	rrsG	16S ribosomal RNA
Reads supporting (aligned to +/- strand): ref base T (30/60); new base C (26/20); total (56/80)
Fisher's exact test for biased strand distribution p-value = 1.07e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.21e-01

Only 100 of 136 total aligned reads displayed.

GGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCC  >  Exported/1763502‑1763618

ggAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCCATGGATCGTCGCCtt                                                 <  1:3224739/70‑1 (MQ=255)

ggAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCCAGGGATCGTCGCCtt                                                 <  1:4189585/70‑1 (MQ=14)

    tCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCCAGGGATCGTCGCCTTg                                                <  1:1362244/67‑1 (MQ=18)

    tCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCCAGGGATCGTCGCCTTGGt                                              >  1:2543939/1‑69 (MQ=25)

    tCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCCAGGGATCGTCGCCTTGGTGa                                            <  1:3699791/71‑1 (MQ=21)

    tCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCCAGGGATCGTCGCCTTGGTGa                                            <  1:3281157/71‑1 (MQ=21)

     cTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCCAGGGATCGTCGCCTTGGTGAg                                           >  1:736176/1‑71 (MQ=21)

      tGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCCAGGGATCGTCGCCTTgg                                               >  1:2142630/1‑66 (MQ=25)

      tGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCCAGGGATCGTCGCCTTgg                                               >  1:483060/1‑66 (MQ=25)

      tGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCCAGGGATCGTCGCCTTgg                                               >  1:4960723/1‑66 (MQ=25)

      tGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCCAGGGATCGTCGCCTTgg                                               >  1:1349280/1‑66 (MQ=25)

      tGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCCAGGGATCGTCGCCTTg                                                >  1:742252/1‑65 (MQ=18)

        gACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCCAGGGATCGTCGCCTTGGTGAGcc                                         <  1:4658648/70‑1 (MQ=25)

        gACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCCAGGGATCGTCGCCTTGGTGAGcc                                         <  1:705015/70‑1 (MQ=25)

         aCCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGt                                       <  1:3193297/71‑1 (MQ=34)

             tgtCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTAcc                                   <  1:241780/71‑1 (MQ=34)

             tgtCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTAcc                                   <  1:4718110/71‑1 (MQ=34)

                 tcAGTTCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGc                                          <  1:4878817/60‑1 (MQ=11)

                 tcAGTTCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGc                                          <  1:891750/60‑1 (MQ=11)

                 tcAGTTCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCTACTGATCCTCGCCTTGGTGAGc                                          <  1:4588196/60‑1 (MQ=11)

                 tcAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGcc                                         <  1:2314714/61‑1 (MQ=35)

                 tcAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGcc                                         <  1:3309220/61‑1 (MQ=35)

                 tcAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTACCccac                               >  1:1452450/1‑71 (MQ=21)

                 tcAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTACCccac                               >  1:12494/1‑71 (MQ=21)

                  cAGTTCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTACCtcac                               >  1:4572446/1‑70 (MQ=11)

                  cAGTTCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTACCtcac                               >  1:1022699/1‑70 (MQ=11)

                  cAGTTCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTACCtca                                >  1:3746126/1‑69 (MQ=11)

                   aGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCccacca                             <  1:464004/71‑1 (MQ=35)

                      tCCAGTGTGGCTGGTCATCCTCTAAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACcaac                           >  1:566425/1‑70 (MQ=255)

                          gtgtGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGc                       >  1:2036092/1‑70 (MQ=255)

                           tgtgGCTGGTCATCCTCTCAGACCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTa                     <  1:4408184/71‑1 (MQ=255)

                             tgGCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTACCTCACCAACTAGCTAAt                   >  1:4048186/1‑71 (MQ=11)

                             tgGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTaa                    <  1:615526/70‑1 (MQ=255)

                             tgGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTaa                    <  1:3280232/70‑1 (MQ=255)

                             tgGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTaa                    <  1:2777642/70‑1 (MQ=255)

                             tgGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTaa                    <  1:5002850/70‑1 (MQ=255)

                               gCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTa                                     <  1:1834253/51‑1 (MQ=11)

                               gCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTa                                     <  1:3681734/51‑1 (MQ=11)

                               gCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTa                                     <  1:3657948/51‑1 (MQ=11)

                               gCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTa                                     <  1:371786/51‑1 (MQ=11)

                               gCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTa                                     <  1:4646036/51‑1 (MQ=11)

                               gCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTa                                     <  1:4992091/51‑1 (MQ=11)

                               gCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTa                                     <  1:1336918/51‑1 (MQ=11)

                               gCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTa                                     <  1:212854/51‑1 (MQ=11)

                               gCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTa                                     <  1:4379064/51‑1 (MQ=11)

                               gCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTa                                     <  1:2505864/51‑1 (MQ=11)

                                cTGGTCATCCTCTCAGCCCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATcc                 >  1:4443353/1‑70 (MQ=255)

                                cTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATccc                <  1:2711683/71‑1 (MQ=255)

                                cTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATccc                <  1:1173610/71‑1 (MQ=255)

                                cTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATccc                <  1:3640612/71‑1 (MQ=255)

                                cTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATccc                <  1:1717684/71‑1 (MQ=255)

                                   gTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATc             <  1:1085530/71‑1 (MQ=255)

                                      aTCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTg           <  1:1326941/70‑1 (MQ=255)

                                       tCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCCCCAACAAGCTAATCCCATc             <  1:3401115/67‑1 (MQ=255)

                                       tCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATc             <  1:4180275/67‑1 (MQ=255)

                                       tCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATc             <  1:1050380/67‑1 (MQ=255)

                                       tCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATc             <  1:2235420/67‑1 (MQ=255)

                                         ctctCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGca       >  1:1537970/1‑71 (MQ=255)

                                          tctcAGACCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCt                      <  1:1320844/55‑1 (MQ=255)

                                          tctcAGACCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCt                      <  1:2355233/55‑1 (MQ=255)

                                          tctcAGACCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCt                      <  1:1946977/55‑1 (MQ=255)

                                           ctcAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCAt              >  1:4973576/1‑62 (MQ=255)

                                           ctcAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCAt              >  1:3195243/1‑62 (MQ=255)

                                           ctcAGACCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCAt              <  1:2857380/62‑1 (MQ=255)

                                           ctcAGACCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCAt              <  1:2132786/62‑1 (MQ=255)

                                           ctcAGACCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCAt              <  1:3149788/62‑1 (MQ=255)

                                           ctcAGACCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCAt              <  1:5102724/62‑1 (MQ=255)

                                           ctcAGACCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCAt              <  1:1723317/62‑1 (MQ=255)

                                           ctcAGACCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCAt              <  1:3928392/62‑1 (MQ=255)

                                           ctcAGACCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGcac      >  1:4233531/1‑70 (MQ=255)

                                            tcAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACcaa                            >  1:1800905/1‑47 (MQ=255)

                                            tcAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACcaa                            >  1:2044302/1‑47 (MQ=255)

                                            tcAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACAt    >  1:3123849/1‑71 (MQ=255)

                                            tcAGACCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGca       >  1:3872538/1‑68 (MQ=255)

                                            tcAGACAAGCCAGGGATCGTCGCCTTGGTGAGACGTTa                                     >  1:4263568/1‑38 (MQ=14)

                                             cAGACCATCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATc   >  1:4784450/1‑71 (MQ=255)

                                             cAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATc   >  1:1234723/1‑71 (MQ=255)

                                             cAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATc   >  1:4550254/1‑71 (MQ=255)

                                             cAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATc   >  1:4464581/1‑71 (MQ=255)

                                             cAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATc   >  1:3560832/1‑71 (MQ=255)

                                             cAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATc   >  1:4398980/1‑71 (MQ=255)

                                             cAGACCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCt            >  1:836957/1‑62 (MQ=255)

                                             cAGACCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCt            >  1:3015142/1‑62 (MQ=255)

                                             cAGACCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCt            >  1:612096/1‑62 (MQ=255)

                                             cAGACCAGCCAGGGATCGTCGCCTTGGTGACCCGTTACCCCACCAACAAGCAAATCCCATCt            >  1:4051324/1‑62 (MQ=17)

                                              aGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGcaca     <  1:4346734/68‑1 (MQ=255)

                                              aGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGcaca     <  1:1436071/68‑1 (MQ=255)

                                              aGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGcaca     <  1:190786/68‑1 (MQ=255)

                                              aGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGcaca     <  1:4866292/68‑1 (MQ=255)

                                              aGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGcaca     <  1:2888818/68‑1 (MQ=255)

                                              aGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATcc  <  1:1851731/71‑1 (MQ=255)

                                              aGACCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATcc  >  1:4733271/1‑71 (MQ=255)

                                              aGACCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATcc  >  1:3721379/1‑71 (MQ=255)

                                                    gCTGGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATcc  <  1:3432643/65‑1 (MQ=255)

                                                    gCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATcc  <  1:2737834/65‑1 (MQ=255)

                                                    gCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATcc  <  1:4111124/65‑1 (MQ=255)

                                                    gCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATcc  <  1:1960879/65‑1 (MQ=255)

                                                    gCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATcc  <  1:4416314/65‑1 (MQ=255)

                                                    gCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATcc  <  1:1363365/65‑1 (MQ=255)

                                                    gCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATcc  <  1:3642188/65‑1 (MQ=255)

GGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCC  >  Exported/1763502‑1763618

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`