mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.28.1 revision 52323b585d6f
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 2,201,912 | Δ3,035 bp | [pntA]–tqsA | [pntA], pntB, tqsA | |
| JC | 2,204,804 | Δ120 bp | intergenic (‑239/‑54) | tqsA ← / → mdtJ | AI‑2 transporter TqsA/spermidine export protein MdtJ |
| RA | 3,668,924 | (T)5→6 | pseudogene (353/455 nt) | lpxA ← | hydroxymyristoyl‑ACP dehydratase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | DH1 | 299568 = | NA (NA) | 293 (0.570) | 172/300 | 1.7 | 50.7% | noncoding (5/773 nt) | repeat_region | repeat region |
| ? | DH1 | = 490615 | 285 (0.550) | coding (3110/3801 nt) | yhdP | DUF3971 domain‑containing protein | |||||
| * | ? | DH1 | = 300335 | NA (NA) | 312 (0.610) | 183/300 | 1.2 | 52.9% | noncoding (772/773 nt) | repeat_region | repeat region |
| ? | DH1 | 490607 = | 278 (0.540) | coding (3102/3801 nt) | yhdP | DUF3971 domain‑containing protein | |||||
| * | ? | DH1 | = 1702500 | 257 (0.500) | 245 (0.490) | 162/292 | 1.9 | 50.6% | noncoding (5/1205 nt) | repeat_region | repeat region |
| ? | DH1 | 1703700 = | 228 (0.460) | noncoding (1205/1205 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | = 2678609 | 222 (0.430) | 238 (0.480) | 153/292 | 2.5 | 49.5% | noncoding (1/1259 nt) | repeat_region | repeat region |
| ? | DH1 | 2679871 = | 269 (0.540) | intergenic (‑69/+280) | insE1/lit | transposase/bacteriophage T4 late gene expression‑blocking protein | |||||
| * | ? | DH1 | = 2991630 | 281 (0.550) | 343 (0.670) | 149/298 | 2.9 | 55.0% | coding (331/1686 nt) | ybjL | transporter |
| ? | DH1 | = 3577068 | NA (NA) | noncoding (1198/1201 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | 3203897 = | 269 (0.520) | 259 (0.530) | 166/284 | 1.5 | 50.3% | coding (512/708 nt) | ybeR | hypothetical protein |
| ? | DH1 | = 3203926 | 257 (0.530) | coding (483/708 nt) | ybeR | hypothetical protein | |||||
| * | ? | DH1 | = 3575873 | 250 (0.490) | 253 (0.510) | 164/292 | 1.8 | 49.3% | noncoding (3/1201 nt) | repeat_region | repeat region |
| ? | DH1 | 3577073 = | 277 (0.550) | intergenic (+151/‑282) | insH1/yagM | transposase/hypothetical protein | |||||
| * | ? | DH1 | 3970034 = | 307 (0.600) | 351 (0.730) | 196/282 | 0.4 | 53.7% | intergenic (‑120/‑94) | fimA/ECDH1_RS19620 | type‑1 fimbrial protein, A chain/hypothetical protein |
| ? | DH1 | 3970348 = | 317 (0.660) | intergenic (+32/+48) | ECDH1_RS19620/fimE | hypothetical protein/tyrosine recombinase | |||||
| * | ? | DH1 | = 3970042 | 307 (0.600) | 331 (0.680) | 189/282 | 0.5 | 52.2% | intergenic (‑128/‑86) | fimA/ECDH1_RS19620 | type‑1 fimbrial protein, A chain/hypothetical protein |
| ? | DH1 | = 3970338 | 317 (0.660) | intergenic (+22/+58) | ECDH1_RS19620/fimE | hypothetical protein/tyrosine recombinase | |||||
| * | ? | DH1 | = 3970987 | 282 (0.550) | 284 (0.590) | 181/282 | 0.8 | 50.8% | intergenic (‑37/+16) | fimE/insB1 | tyrosine recombinase/transposase |
| ? | DH1 | 3971764 = | 284 (0.590) | intergenic (‑258/+482) | insB1/fimB | transposase/tyrosine recombinase | |||||
| * | ? | DH1 | = 4079176 | 292 (0.570) | 268 (0.550) | 171/284 | 1.3 | 49.5% | noncoding (1/771 nt) | repeat_region | repeat region |
| ? | DH1 | 4079953 = | 270 (0.550) | intergenic (+24/+135) | insB1/ytfH | transposase/HxlR family transcriptional regulator | |||||
| * | ? | DH1 | = 4493676 | 301 (0.590) | 291 (0.570) | 183/300 | 1.2 | 49.4% | coding (569/1641 nt) | ubiB | ubiquinone biosynthesis protein UbiB |
| ? | DH1 | 4493689 = | 295 (0.570) | coding (556/1641 nt) | ubiB | ubiquinone biosynthesis protein UbiB | |||||