| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | DH1 | 1,423,597 | T→A | pseudogene (1627/2646 nt) | yfcV → | fimbrial assembly protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | DH1 | 1,423,597 | 0 | T | A | 97.7% | 1458.3 / 9.6 | 393 | pseudogene (1627/2646 nt) | yfcV | fimbrial assembly protein |
| Reads supporting (aligned to +/- strand): ref base T (6/3); new base A (188/196); total (194/199) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 412 total aligned reads displayed.
GATGCCAGTGACAGCGAAATGGTCCGTACGGGCAACGACAAAGAGATGTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACTACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATGTAGATTTCGCTCAGTATGCCGTGGGGCGACAACAGTACCG > DH1/1423450‑1423744 | gCCAGTGACAGCGAAATGGTCCGTACGGGCAACGACAAAGAGATGTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAacaacaaca < 5:831222/151‑1 (MQ=255) cAGTGACAGCGAAATGGTCCGTACGGGCAACGACAAAGAGATGTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAAcatc > 1:1016140/1‑151 (MQ=255) gTGACAGCGAAATGGTCCGTACGGGCAACGACAAAGAGATGTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAAcatcat < 1:476238/151‑1 (MQ=255) gACAGCGAAATGGTCCGTACGGGCAACGACAAAGAGATGTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATg < 7:752244/150‑1 (MQ=255) aCAGCGAAATGGTCCGTACGGGCAACGACAAAGAGATGTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGct > 5:711121/1‑151 (MQ=255) aGCGAAATGGTCCGTACGGGCAACGACAAAGAGATGTAAACAGCCACTTATAAACAGAAATTCCGCGAAGCGTGACTTTCGGTTTATCTCAACTATACCAGCGATACGTACTCGGATCGTGAGGAGCAGACAAACAACAACATCATCctct > 3:374963/1‑151 (MQ=255) aaaTGGTCCGTACGGGCAACGACAAAGAGATGTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCa < 1:6752/151‑1 (MQ=255) aTGGTCCGTACGGGCAACGACAAAGAGATGTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACt > 5:676946/1‑151 (MQ=255) tGGTCCGTACGGGCAACGACAAAGAGATGTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACt > 1:861579/1‑150 (MQ=255) ggTCGGTACGGGCAACGACAAAGAGATGTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTAt < 4:1003634/151‑1 (MQ=255) ccGTACGGGCAACGACAAAGAGATGTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTAttt < 1:296533/150‑1 (MQ=255) ccGTACGGGCAACGACAAAGAGATGTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTc < 8:289644/151‑1 (MQ=255) ccGTACGGGCAACGACAAAGAGATGTACACCGCCACTTAAAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTc < 6:1325734/151‑1 (MQ=255) cGTACGGTCAACGACAAAGAGATGTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCa < 8:1766048/151‑1 (MQ=255) aCGGGCAACGACAAAGAGATGTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAat < 1:229553/150‑1 (MQ=255) cGGGCAACGACAAAGAGATGTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAatat < 6:1148079/151‑1 (MQ=255) cGGGCAACGACAAAGAGATGTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAatat < 7:1473008/151‑1 (MQ=255) gggCAACGACAAAGAGATGTACACCGCCACTTATTACCAGAAGTTCCGCGATGCGGGTGTTTGGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAatat < 4:299714/150‑1 (MQ=255) ggCAACGACAAAGAGATGTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATgg < 5:1078312/151‑1 (MQ=255) ggCAACGACAAAGAGATGTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATgg > 4:1339367/1‑151 (MQ=255) ggCAACGACAAAGAGATGTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATgg < 6:271616/151‑1 (MQ=255) aaCGACAAAGAGATGCACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGgca < 4:1668578/151‑1 (MQ=255) cGACAAAGAGATGTACACCGCTACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGgcagc > 1:743133/1‑151 (MQ=255) gACAAAGAGATGTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGgcagca < 3:4461/151‑1 (MQ=255) aaaGAGATGTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTc < 8:843614/151‑1 (MQ=255) agagTTGTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGt > 5:1667434/1‑151 (MQ=255) agagATGTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGt > 4:841826/1‑151 (MQ=255) ataTGTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTaa < 4:1549630/149‑1 (MQ=255) agaTGTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGTTTTATCTCAACTATACCTGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTaa < 6:592373/151‑1 (MQ=255) aTGTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAat > 5:560570/1‑150 (MQ=255) gTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAatat < 7:842009/150‑1 (MQ=255) gTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAatat < 3:1600288/150‑1 (MQ=255) gTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATg > 7:1138965/1‑151 (MQ=255) acacCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGa < 4:1130686/150‑1 (MQ=255) acacCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAg < 1:1740024/151‑1 (MQ=255) acacCGACACTTATAACTAGATCTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGACATACCTTCTGGGATCGTGAGGATCAGACAAACAACAACATCATGCTGTCCCACTATTTCAATATGGGCAGCATTCGTAATATGa < 6:1618265/150‑1 (MQ=255) cacCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGc < 2:938115/151‑1 (MQ=255) cGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGtt > 2:1198879/1‑151 (MQ=255) aCTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTccc < 2:1817185/151‑1 (MQ=255) aCTTATAACCAGAACTTCCGCCATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTccc > 1:518917/1‑151 (MQ=255) cTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCt > 4:403931/1‑151 (MQ=255) attATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCt < 5:473537/150‑1 (MQ=255) tataACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCt < 3:765914/149‑1 (MQ=255) tataACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCt < 7:1728516/149‑1 (MQ=255) tataACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTg < 7:463830/150‑1 (MQ=255) aaCCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGTGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACt < 4:460204/150‑1 (MQ=255) cAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCt > 3:870739/1‑151 (MQ=255) gAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTAc > 7:971139/1‑151 (MQ=255) cTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGc > 3:1352848/1‑151 (MQ=255) cTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGc > 2:1551010/1‑151 (MQ=255) cgcgATGCGGGTGTTTCGGTTTATCTCAACTATACCCGACATACATACTGCGATCGTGAGGAGCAGACAAACAACAACAACATGCTCTCCCACTATTTCAATATTGACAGCATTAGTAATATGAGCGTTTCACTTACTTGCTACCGCTACg > 2:1709229/1‑151 (MQ=255) cGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATg > 8:745987/1‑150 (MQ=255) gggTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGAc > 2:1365236/1‑151 (MQ=255) ggTGTTTCGGTTTATATCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGCGCGTTTCCCTGAGTGGCTACCGCTACGAGTATGAc > 6:443628/1‑150 (MQ=255) tgtTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAAc > 6:1489938/1‑151 (MQ=255) gtTTCGTTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAAc < 8:1228356/150‑1 (MQ=255) gtTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAAc < 7:643407/150‑1 (MQ=255) ttCGGTTTATCTCAACTATACCCGGCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCgg > 2:69809/1‑151 (MQ=255) cGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATAATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGc > 2:1094994/1‑151 (MQ=255) ggTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACACCCGGGCg > 7:1388194/1‑151 (MQ=255) ggTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCg < 7:1621219/151‑1 (MQ=255) gTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCgg > 3:1052371/1‑151 (MQ=255) tttATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCgg > 5:1416125/1‑150 (MQ=255) tttATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCgg > 4:1418279/1‑150 (MQ=255) ttATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGa < 6:1061994/150‑1 (MQ=255) aTCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATa < 3:517829/150‑1 (MQ=255) cAACTATACCCGCCATACGTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAggg < 4:909729/150‑1 (MQ=255) cAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAgg < 8:574941/149‑1 (MQ=255) cAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAg < 3:1802859/148‑1 (MQ=255) aCTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCAt > 3:587645/1‑151 (MQ=255) cTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATg > 1:1802778/1‑151 (MQ=255) cTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATg > 3:849234/1‑151 (MQ=255) atataCCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATg < 2:464554/150‑1 (MQ=255) ataCCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATGt > 7:596028/1‑150 (MQ=255) ataCCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATGt > 1:1118352/1‑150 (MQ=255) ataCCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATGt > 6:1287864/1‑150 (MQ=255) ataCCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATGTa < 1:960299/151‑1 (MQ=255) ataCCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATGTa < 2:862803/151‑1 (MQ=255) aCCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATGt > 4:1734166/1‑148 (MQ=255) gCCATACCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATGTAGATTTc < 5:393693/151‑1 (MQ=255) aCCTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATGTAGATTTCGCTCa < 3:1220973/151‑1 (MQ=255) ccTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATGTAGATTTCGCTc > 8:1562593/1‑149 (MQ=255) ccTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATGTAGATTTCGCTCAg < 7:1219483/151‑1 (MQ=255) cTACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATGTAGATTTCGCTCAGt > 1:1279384/1‑151 (MQ=255) tACTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATGTAGATTTCGCTCAGt > 2:1756191/1‑150 (MQ=255) aCTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATGTAGATTTCGCTCAGt < 1:374327/149‑1 (MQ=255) aCTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATGTAGATTTCGCTCAGTAt < 3:939965/151‑1 (MQ=255) aCTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATGTAGATTTCGCTCAGTAt < 8:1418345/151‑1 (MQ=255) aCTGGGATCGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATGTAGATTTCGCTCAGTAt < 5:1511952/151‑1 (MQ=255) cGTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATGTAGATTTCGCTCAGTATGCCGTggg < 7:34916/151‑1 (MQ=255) gTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATGTAGATTTCGCTCAGTATGCCGTgggg > 7:1028734/1‑151 (MQ=255) gTGAGGAGCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATGTAGATTTCGCTCAGAATGCCGTgggg > 6:909283/1‑151 (MQ=255) gaggagCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATGTAGATTTCGCTCAGTATGCCGTGGGGCg < 3:1692253/151‑1 (MQ=255) atgagCAGACAAACAACAACATCAAGCTCTCCCACTATTTCAATATGCGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATGTAGATTTCGCGCAGTATGCCGTGGGGCGa < 4:744522/149‑1 (MQ=255) aggagCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATGTAGATTTCGCTCAGTATGCCGTGGGGCg > 2:1318775/1‑150 (MQ=255) gagCAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATAAGAGCCTATCCATGACTCGCTACCGCTACTAGTATGACAACCGGGCGGATAAGGGCATGTAGATTTCGCTCAGAATGACGTGGGTCGac > 1:1472798/1‑150 (MQ=255) cAGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATGTAGATTTCGCTCAGTATGCCGTGGGGCGacaac > 5:1830247/1‑150 (MQ=255) aGACAAACAACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATGTAGATTTCGCTCAGTATGCCGTGGGGCGacaac > 1:1341959/1‑149 (MQ=255) acaaacaaCAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATGTAGATTTCGCTCAGTATGTCGTGGGGCGACAACAGTa < 7:245153/151‑1 (MQ=255) aacaacaacATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATGTAGATTTCGCTCAGTATGCCGTGGGGCGACAACAGTACCg > 3:668385/1‑151 (MQ=255) | GATGCCAGTGACAGCGAAATGGTCCGTACGGGCAACGACAAAGAGATGTACACCGCCACTTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACCTACTGGGATCGTGAGGAGCAGACAAACTACAACATCATGCTCTCCCACTATTTCAATATGGGCAGCATTCGTAATATGAGCGTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATGTAGATTTCGCTCAGTATGCCGTGGGGCGACAACAGTACCG > DH1/1423450‑1423744 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |