Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp 100% insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503 1979278 776 87 [0] [0] 88 insB1–insA insB1,insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785020 (0.000)74 (0.770) 53/260 NT 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

AAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATT  >  NC_000913/1978357‑1978650
                                                                                                                                                 |                                                                                                                                                    
aaaTGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtat                                                                                                                                                   <  1:108488‑M1/149‑4 (MQ=255)
    gggTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGAGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagt                                                                                                                                               >  2:206734‑M1/1‑142 (MQ=255)
      gTCTTTACCCTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtca                                                                                                                                             <  2:1099412‑M1/149‑10 (MQ=255)
      gTCTTTACCCTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtca                                                                                                                                             >  2:667751‑M1/1‑140 (MQ=255)
       tcgttaccCTTATCTAAGATTTTTCATAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACATAAAACACTCAATTACTTAACATAAATGtataagtcat                                                                                                                                            <  2:980141‑M1/146‑11 (MQ=255)
       tCTTTACACTTATCTAAGATTTTTCTTAAATCGCCGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCCATTTTGAATAATGTGTGATGCAGATCACACAAAACACACAATTACTTAACATAAATGtataagtcat                                                                                                                                            <  1:1103778‑M1/149‑11 (MQ=255)
       tCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcat                                                                                                                                            <  2:179605‑M1/149‑11 (MQ=255)
       tCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcat                                                                                                                                            <  1:1493687‑M1/149‑11 (MQ=255)
         tttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAACGtataagtcatac                                                                                                                                          >  1:1300476‑M1/1‑137 (MQ=255)
              acTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttg                                                                                                                                     >  1:653502‑M1/1‑132 (MQ=255)
                   tCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCCGATCACACAAAACACTCAATTACTTAACATAAATGtataggtcatacttttgttttg                                                                                                                                >  1:1449436‑M1/1‑127 (MQ=255)
                    cTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                               <  1:510648‑M1/149‑24 (MQ=255)
                    cTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                               <  1:894995‑M1/149‑24 (MQ=255)
                            tttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattt                                                                                                                       <  1:1372809‑M1/149‑32 (MQ=255)
                            tttCCTAAATCGACGCAACTGTACGCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattt                                                                                                                       <  2:1467188‑M1/149‑32 (MQ=255)
                              tCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttca                                                                                                                     <  2:1729464‑M1/149‑34 (MQ=255)
                                 tAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcgatc                                                                                                                  >  1:290288‑M1/1‑113 (MQ=255)
                                 tAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatc                                                                                                                  <  1:356515‑M1/149‑37 (MQ=255)
                                    accgaCGCAAGTGTACTCGTCACTACACGCACATACAACGGAGGGGCGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt                                                                                                               <  2:163239‑M1/147‑40 (MQ=255)
                                    aTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt                                                                                                               >  1:1402750‑M1/1‑110 (MQ=255)
                                       gACGCAACTGTCCTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaa                                                                                                            <  2:1324074‑M1/149‑43 (MQ=255)
                                          gCAACTGTACTCGTCACTACACGCACATATAACGGAGGGGGGCTGCCATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                                         <  2:1148429‑M1/149‑46 (MQ=255)
                                          gCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                                         <  1:1588302‑M1/149‑46 (MQ=255)
                                           cAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaag                                                                                                        >  1:1559823‑M1/1‑103 (MQ=255)
                                                gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                                                                   <  1:206915‑M1/149‑52 (MQ=255)
                                                    tCGTCACTACACGCTCATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtttaagtcatacttttgttttgggtttatttcaatctgttaaaaagtttttcgct                                                                                               <  1:1102334‑M1/149‑56 (MQ=255)
                                                    tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttttgct                                                                                               >  2:958097‑M1/1‑94 (MQ=255)
                                                       tCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacg                                                                                            >  1:200272‑M1/1‑91 (MQ=255)
                                                          cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta                                                                                         >  1:724067‑M1/1‑88 (MQ=255)
                                                           tACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctag                                                                                        >  2:568154‑M1/1‑87 (MQ=255)
                                                           tACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGAACACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttagggtgtatttcaatacgttaaaaagtttttcgctacgctag                                                                                        >  2:1157224‑M1/1‑87 (MQ=255)
                                                           tACACGCACATACAACGGAGGGGGACTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaagaagtttttcgctacgctag                                                                                        >  1:1349709‑M1/1‑87 (MQ=255)
                                                             cacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGTAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagca                                                                                      <  1:716963‑M1/149‑65 (MQ=255)
                                                                    aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaa                                                                               >  1:684766‑M1/1‑78 (MQ=255)
                                                                          cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa                                                                         <  1:1266888‑M1/149‑78 (MQ=255)
                                                                          cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa                                                                         <  1:289923‑M1/149‑78 (MQ=255)
                                                                            gAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaaca                                                                       <  1:770322‑M1/149‑80 (MQ=255)
                                                                                  ggcggcGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaata                                                                 <  2:1713855‑M1/149‑86 (MQ=255)
                                                                                    cTGCTATTTGCGATAATGCGTGATGCAGATCACACAAAACACGCAATTACTTAACATAGATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaagcaggaataat                                                               <  2:727051‑M1/149‑88 (MQ=255)
                                                                                    cTGCGCTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttgtgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagaaaaaatgaaacaggaataat                                                               <  2:189710‑M1/149‑88 (MQ=255)
                                                                                       cGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcga                                                            >  1:1118977‑M1/1‑59 (MQ=255)
                                                                                       cGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcga                                                            >  1:970165‑M1/1‑59 (MQ=255)
                                                                                        gATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagggataatcgaa                                                           >  1:1152901‑M1/1‑58 (MQ=255)
                                                                                            ttCAATAATGCGTGATGCAGATCACACAAACCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatgtgttaaaaagtttttcgctacgctagcaagcaaaaatgaaaaaggaataatcgaaatgg                                                       >  2:546414‑M1/1‑54 (MQ=255)
                                                                                            ttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAACTGtataagtcatacttttattatgggtgtattaaacaatgttaaaaagtttttctctacgatagcaagcaaaaatgaaacgggcataatcgaaatgg                                                       >  2:546158‑M1/1‑54 (MQ=255)
                                                                                            ttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaataaaacaggaataatcaacacgc                                                       >  2:405733‑M1/1‑54 (MQ=255)
                                                                                               aataatGCGTGTTGCAGATCACACAGAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttcttcgcaacgctagcaagcaaaaacgaaacaggaataaccgcaatgggat                                                    >  1:933029‑M1/1‑51 (MQ=255)
                                                                                                       gTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcctagtttaaacaggaataatcgaaatgggatgttgcgca                                            <  1:882657‑M1/149‑107 (MQ=255)
                                                                                                       gTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgca                                            <  2:644031‑M1/149‑107 (MQ=255)
                                                                                                       gTGATGCAGATCACAAAAAACACTCAAATACTTAACAGAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacactagaaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgca                                            <  2:690292‑M1/149‑107 (MQ=255)
                                                                                                         gATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcaca                                          >  2:364916‑M1/1‑41 (MQ=255)
                                                                                                         gATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctggtaaaaagtttttcgctacgctagcaagcaaaaataaaacaggaaaaatcgaaatgggatgttgcgcaca                                          >  2:734979‑M1/1‑41 (MQ=255)
                                                                                                          aTGCAGATCACACAAAACTCTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgatacaggaataatcgaaatgggatgttgcgcacag                                         <  1:1159834‑M1/149‑110 (MQ=255)
                                                                                                          aTGCAGATCACACAAAACCCTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacag                                         <  2:1073862‑M1/149‑110 (MQ=255)
                                                                                                          aTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacag                                         <  1:1161861‑M1/149‑110 (MQ=255)
                                                                                                          aTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgagtgtattgcaatatgttaaaaagtttttcgctacgctagcaagcaaaagtgaaagaggagtaatctagatgggatgttggggacag                                         >  1:743963‑M1/1‑40 (MQ=255)
                                                                                                           tGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagt                                        >  1:580735‑M1/1‑39 (MQ=255)
                                                                                                            gCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtc                                       >  2:942266‑M1/1‑38 (MQ=255)
                                                                                                              tgaTCACACAAAACCCTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacatgaataatcgaaatttgatgttgcgcacagtcaa                                     <  1:1330096‑M1/148‑114 (MQ=255)
                                                                                                              aGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcataatttattagtgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaa                                     >  1:802709‑M1/1‑36 (MQ=255)
                                                                                                               gATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaa                                    <  1:568154‑M1/149‑115 (MQ=255)
                                                                                                                aTCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaa                                   <  2:1385816‑M1/149‑116 (MQ=255)
                                                                                                                   acacaAAACTCTGAATTACTTAACATAAATGtataactcatacttgtgttttgtgtacattacaatctggcaaaaagtttttcgctacgctagcaaccaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataa                                <  2:475861‑M1/149‑119 (MQ=255)
                                                                                                                   acacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataa                                <  2:1524216‑M1/149‑119 (MQ=255)
                                                                                                                   acacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataa                                >  2:1633637‑M1/1‑31 (MQ=255)
                                                                                                                   acaaaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataa                                <  2:889313‑M1/149‑119 (MQ=255)
                                                                                                                     acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataact                              <  2:1557241‑M1/149‑121 (MQ=255)
                                                                                                                           cacTCAATTACTTAACATAAATGgataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgt                        <  2:1512792‑M1/149‑127 (MQ=255)
                                                                                                                            acTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttttttttttttttaagcaaaaatgaaacaggaataattgaaatgggatgttgggcacagtcaaaataactcaccgta                       >  2:1236892‑M1/1‑22 (MQ=255)
                                                                                                                            acTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgta                       <  2:1424611‑M1/149‑128 (MQ=255)
                                                                                                                              tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagaaaaaatgaaaaaggaataatcgaaatgggcttttgcgcgcagacaaaataactcacagtaaa                     >  2:1107571‑M1/1‑20 (MQ=255)
                                                                                                                                 aTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataa                  <  2:1208850‑M1/149‑133 (MQ=255)
                                                                                                                                  ttACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttttgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataat                 >  1:1803181‑M1/1‑16 (MQ=255)
                                                                                                                                   tACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgtttcgcacagtcaaaataactcaccgtaaataatc                <  1:373003‑M1/149‑135 (MQ=255)
                                                                                                                                   gacTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaacaactcaccgtaaataatc                <  1:1331572‑M1/148‑135 (MQ=255)
                                                                                                                                     cTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtctaaataactcaccgtaaataatcat              <  1:1349387‑M1/149‑137 (MQ=255)
                                                                                                                                      ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggctgttgcgcacagtcaaaataactcaccgtaaacaatcatc             >  2:215385‑M1/1‑12 (MQ=255)
                                                                                                                                      ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatc             >  1:208897‑M1/1‑12 (MQ=255)
                                                                                                                                      ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatc             >  1:1611901‑M1/1‑12 (MQ=255)
                                                                                                                                       tAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatct            >  1:956549‑M1/1‑11 (MQ=255)
                                                                                                                                       tAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataacccaccctaaataatcatct            >  2:140135‑M1/1‑11 (MQ=255)
                                                                                                                                       tAACATAAATGtaaaagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatct            >  1:1240830‑M1/1‑11 (MQ=255)
                                                                                                                                           aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcccagtccaaataactcaccgtaaataagcatctgcta        >  2:1649595‑M1/1‑7 (MQ=255)
                                                                                                                                           aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaagtaatcatcagcga        >  2:26018‑M1/1‑7 (MQ=255)
                                                                                                                                              aaTTtagaagtcatacttgtgttttgggtggatttcaaactgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaatcatcgaaattggatcttgcgcacagtcaaaataactcaccgtaaataatcatctgctataa     <  2:1742705‑M1/149‑146 (MQ=255)
                                                                                                                                                tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaat   >  1:645661‑M1/1‑2 (MQ=255)
                                                                                                                                                 gtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaata  <  1:1434677‑M1/149‑149 (MQ=255)
                                                                                                                                                 |                                                                                                                                                    
AAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATT  >  NC_000913/1978357‑1978650

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.