mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 93,173 | A→C | R587S (AGA→AGC) D3A (GAT→GCT) |
ftsI → murE → |
transpeptidase involved in septal peptidoglycan synthesis; penicillin‑binding protein 3 UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate:meso‑ diaminopimelate ligase |
| MC JC | 257,908 | Δ776 bp | [crl] | [crl] | |
| RA | 659,747 | Δ1 bp | coding (470/966 nt) | lipA ← | lipoate synthase |
| MC JC | 1,299,499 | Δ1,199 bp | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,413,542 | A→T | Y67N (TAT→AAT) | ydaC ← | DUF1187 family protein, Rac prophage; putative double‑strand break reduction protein |
| RA | 1,793,898 | Δ1 bp | coding (212/552 nt) | btuE ← | glutathione peroxidase |
| MC JC | 1,978,503 | Δ776 bp | insB1–insA | insB1, insA | |
| RA | 2,093,040 | G→A | A215T (GCT→ACT) | hisC → | histidinol‑phosphate aminotransferase |
| RA | 4,116,406 | C→T | M272I (ATG→ATA) | glpK ← | glycerol kinase |
| RA | 4,182,928 | A→T | E562V (GAA→GTA) | rpoB → | RNA polymerase, beta subunit |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 227087–228673 | 228895–228689 | 17–1809 | 8 [7] | [7] 8 | [rrlH]–rrfH | [rrlH],rrfH |
| * | * | ÷ | NC_000913 | 366196 | 366416 | 221 | 8 [7] | [7] 8 | [lacZ] | [lacZ] |
| * | * | ÷ | NC_000913 | 3423734–3424564 | 3424564 | 1–831 | 8 [7] | [7] 8 | [rrfD]–[rrlD] | [rrfD],[rrlD] |