New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 12078059 (0.180)37 (0.850) 36/262 0.2 82.2% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 = 1209602 8 (0.180)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

GCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACA  >  NC_000913/1207657‑1207953
                                                                                                                                                    |                                                                                                                                                    
gCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAACCCTTGGTTTGGGAGAAGG                                                                                                                                                      >  1:366223‑M1/1‑149 (MQ=255)
gCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG                                                                                                                                                      >  1:202218‑M1/1‑149 (MQ=255)
 catcgctttacgttgtagatctgtgttctggtcatttgttggtacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGa                                                                                                                                                     >  1:321084‑M1/133‑149 (MQ=255)
 cagcgccttacggtggagatctgtggtctggtcatttgttgatacgcttacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGa                                                                                                                                                     >  2:550499‑M1/133‑149 (MQ=255)
  agcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcattaacgTTGGTTTGGGGGAAGGAg                                                                                                                                                    <  1:30281‑M1/18‑1 (MQ=255)
  agcgaattaggttgtagatctgggtgctgggcagttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAg                                                                                                                                                    >  1:4404‑M1/132‑149 (MQ=255)
       gTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgca                                                                                                                                               >  1:460014‑M1/1‑142 (MQ=255)
           caccgtGGGGAGGGGGCGGCGCGCCGAGTGACTTTCCGTACTTCGGGTGCTGCGGTTAAGCCTCAAGAATCCGTTTGGCGTTATTAAATCGGATGGCACTGTGCAATCGGCTCTCGAAACCCTTGGGTTGGGAGAAGGAGCAAAACTCa                                                                                                                                           <  2:239038/144‑1 (MQ=255)
            gttgtagatctgtgttctgttcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgctgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCaa                                                                                                                                          >  2:532330‑M1/122‑149 (MQ=255)
            gttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtgaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCaa                                                                                                                                          <  1:670714‑M1/28‑1 (MQ=255)
             ttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAAt                                                                                                                                         <  1:649701‑M1/29‑1 (MQ=255)
             ttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcaagttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAAt                                                                                                                                         >  2:195694‑M1/121‑149 (MQ=255)
              tgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGCGTAGGAGCAAAACTCAATg                                                                                                                                        >  2:98111‑M1/120‑149 (MQ=255)
              tgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGGTTGGGAGAACGGGCAAAACTCAATg                                                                                                                                        <  1:223017‑M1/30‑1 (MQ=255)
              ccTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgccttccctg                                                                                                                                        >  2:572042‑M1/1‑135 (MQ=255)
               gtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccattcgcttgttatttcttcattttcataaacgATGGTTTGGGAGAAGGAGCAAAACTCAATgc                                                                                                                                       <  2:88681‑M1/31‑1 (MQ=255)
                   agaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggt                                                                                                                                   <  2:613625‑M1/149‑20 (MQ=255)
                    tctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatgttcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa                                                                                                                                  >  1:24433‑M1/114‑149 (MQ=255)
                       ggggCGGCACGACCAGTTACTTACCGCACTGCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttgtgggcc                                                                                                                               <  2:749006‑M1/149‑24 (MQ=255)
                        gggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAACCCGTTTGGCGATACCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtccc                                                                                                                              <  2:18023‑M1/149‑25 (MQ=255)
                          gcggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccgg                                                                                                                            <  2:354311‑M1/149‑27 (MQ=255)
                             tggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaacgcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCACCAACGGCTGCAt                                                                                                                         <  2:223579‑M1/45‑1 (MQ=255)
                             gcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttc                                                                                                                         >  1:785144‑M1/1‑120 (MQ=255)
                               aCGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCGTGGTTTGGGAGAAGGAGCAAAACTCAGTGCAGCAACGGCTACAtga                                                                                                                       >  1:613359/1‑147 (MQ=255)
                                 gACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtg                                                                                                                     <  1:136694‑M1/149‑34 (MQ=255)
                                  aCCAGTTACTTCCCGCACTTCGCTCGCTGCTGTTAAGCCGCAAGAACCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtgg                                                                                                                    <  1:208779‑M1/149‑35 (MQ=255)
                                        tacttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttca                                                                                                              <  1:86651‑M1/149‑41 (MQ=255)
                                         acttacCGCTCTTCGCGCGCTGCTGTTAAGCCCCAAGAATTCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCGTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcag                                                                                                             <  2:557771‑M1/149‑42 (MQ=255)
                                          atacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCgg                                                                                                            >  1:802815‑M1/92‑149 (MQ=255)
                                          atacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCgg                                                                                                            <  2:660201‑M1/58‑1 (MQ=255)
                                          atacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCgg                                                                                                            >  1:802902‑M1/92‑149 (MQ=255)
                                           ttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCTAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagcc                                                                                                           >  2:440935‑M1/1‑106 (MQ=255)
                                           tacgcggacacagccaatcagcatgctaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcatttacatagacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGt                                                                                                           >  1:503847‑M1/91‑149 (MQ=255)
                                             cgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt                                                                                                         <  1:416392‑M1/61‑1 (MQ=255)
                                              gcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccattggcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTTAATGCAGCAACGCCTCCATTAGGACGCACCGGTTTc                                                                                                        <  2:231555‑M1/62‑1 (MQ=255)
                                                  acatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAg                                                                                                    >  1:672295‑M1/84‑149 (MQ=255)
                                                  aCTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAg                                                                                                    <  1:51130/149‑1 (MQ=255)
                                                    ttCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcatccactccgcca                                                                                                  >  2:223540‑M1/1‑97 (MQ=255)
                                                      cccgcgccgCTGTTACGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCGCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtaattgctccgtggccttcagccactccgccaac                                                                                                <  1:199109‑M1/147‑55 (MQ=255)
                                                        ccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatgtgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCCCCGGTGTCATAGCTATAc                                                                                              <  2:75496‑M1/72‑1 (MQ=255)
                                                         gcgcGGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacagg                                                                                             <  1:406086‑M1/149‑58 (MQ=255)
                                                         cagtaagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTCCCTTAGGACGCACCGGTTGCATAGCTATAcc                                                                                             <  2:144153‑M1/73‑1 (MQ=255)
                                                         caataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATAcc                                                                                             <  2:735648‑M1/73‑1 (MQ=255)
                                                             tgctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctgg                                                                                         <  1:790600‑M1/149‑62 (MQ=255)
                                                             aagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGtt                                                                                         >  1:529849‑M1/73‑149 (MQ=255)
                                                              gctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactcggccaacaggctggc                                                                                        >  2:435053‑M1/1‑87 (MQ=255)
                                                                tgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctg                                                                                      >  2:399197‑M1/1‑85 (MQ=255)
                                                                catgttaaatccccctggtgaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGAAAAAAACGATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATg                                                                                      <  1:595540‑M1/80‑1 (MQ=255)
                                                                  ttAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAt                                                                                    >  1:36771/1‑149 (MQ=255)
                                                                       ccGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgca                                                                               >  1:210790‑M1/1‑78 (MQ=255)
                                                                       ccGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggtg                                                                               <  2:202218/149‑1 (MQ=255)
                                                                       aatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggtg                                                                               >  2:649701‑M1/63‑149 (MQ=255)
                                                                            ccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGGGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATGGCTATCCCGGTTATGGTTGGTGGTAtt                                                                          <  1:252477‑M1/92‑1 (MQ=255)
                                                                              aaTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggct                                                                                       >  1:46440‑M1/1‑71 (MQ=255)
                                                                              aaTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggct                                                                                       <  2:46440‑M1/134‑64 (MQ=255)
                                                                               aTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgcc                                                                       >  2:461112‑M1/1‑70 (MQ=255)
                                                                                tCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTATCGAAAACCATGGGTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactacgaccacaggctggctgaaatgcaatggtgccg                                                                      >  2:659689‑M1/1‑69 (MQ=255)
                                                                                 gtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCa                                                                     >  1:238618‑M1/53‑149 (MQ=255)
                                                                                      tGGCGTTATCAAAGCGGATGGCACTGTGTAAATGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggcgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgcttttt                                                                <  1:224202‑M1/149‑87 (MQ=255)
                                                                                      agcaggaatgatgccatttggttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAg                                                                >  2:425231‑M1/48‑149 (MQ=255)
                                                                                        gCGATATCAAATCGGATGGCACTGTGCAAACGGCCCTCGAAAACCTTGGTTTGGGAGAAGGctctgcatgacctgttggtgtcccggttccgtggccttcagccactcagctatcacgctggctgaaatgcaatggtgccgctttttct                                                              <  2:380926‑M1/149‑89 (MQ=255)
                                                                                        caggaatgatgccatttgcttgttatttcttcattttcataaacgGTGGTTTGGGAGAAGGAGCCAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTGTCATAGCTATACCGGTTCTGCGTGGTGGTATTGGCAAATCAgtc                                                              <  1:739277‑M1/104‑2 (MQ=255)
                                                                                         cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGAAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggatgaaatgcaatggtgccgctttttctg                                                             >  1:467564‑M1/1‑60 (MQ=255)
                                                                                         aggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTaa                                                             >  1:696198‑M1/45‑149 (MQ=255)
                                                                                           atatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCGGTAATc                                                           >  1:245266/1‑149 (MQ=255)
                                                                                           atatCAAATCCGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgct                                                           <  1:291123‑M1/149‑92 (MQ=255)
                                                                                                   tCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaata                                                   >  1:9676‑M1/1‑50 (MQ=255)
                                                                                                        tGGCACTGTGCAAACGGCTCTCGAACACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccgg                                              >  2:501265‑M1/1‑45 (MQ=255)
                                                                                                        tGGCACTGTGCAAACGGCTCGCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccgg                                              <  2:367116‑M1/149‑105 (MQ=255)
                                                                                                           cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccgggac                                           >  2:654990‑M1/1‑42 (MQ=255)
                                                                                                            ttttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGaa                                          >  2:416392‑M1/26‑149 (MQ=255)
                                                                                                               gtgCCACCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgccttacctgttggtttcccgggtccgtgcctttcagccactccggcaacaggctggctgaaatgcaatggtgccgctttttctgctgaagcatacccggaactggc                                       <  2:303290‑M1/149‑112 (MQ=255)
                                                                                                               gtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGGAACGTCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGc                                       >  1:769135/1‑149 (MQ=255)
                                                                                                                atttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGcc                                      >  1:660201‑M1/22‑149 (MQ=255)
                                                                                                                atttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGcc                                      >  2:411730‑M1/22‑149 (MQ=255)
                                                                                                                  ttcttcattttcgtaaacgTTGGGTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGc                                    >  1:62695‑M1/20‑149 (MQ=255)
                                                                                                                   tcttcattttcatacacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCa                                   >  1:223579‑M1/19‑149 (MQ=255)
                                                                                                                   aaaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCa                                   >  2:763842/1‑149 (MQ=255)
                                                                                                                     aCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggc                                 <  2:210790‑M1/149‑118 (MQ=255)
                                                                                                                        attttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGCATGCCGCAAAAGc                              <  2:502304‑M1/136‑1 (MQ=255)
                                                                                                                          tctcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtacagcttccggtgccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatc                            <  1:156104‑M1/149‑123 (MQ=255)
                                                                                                                           ctcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatcc                           <  1:399197‑M1/149‑124 (MQ=255)
                                                                                                                              gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactagcaaaggcttatccgac                        >  1:467688‑M1/1‑23 (MQ=255)
                                                                                                                                atcccttgGTTTGGGAGAAGGctctgcattacctgttggtgtccggtttacgtggacttcagcctctccgccaaccggctggccgaaatgcaatgctgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaa                      <  2:366223‑M1/146‑129 (MQ=255)
                                                                                                                                aaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCct                      <  1:430830/149‑1 (MQ=255)
                                                                                                                                   cgTTGGTGTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTg                   >  1:619658‑M1/3‑149 (MQ=255)
                                                                                                                                    gTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCACAAAAGCATCTACCTCTgg                  <  1:791364‑M1/148‑1 (MQ=255)
                                                                                                                                     ttGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaa                 <  2:804710‑M1/149‑134 (MQ=255)
                                                                                                                                      TGGTTGGGGAGAAGGAGCAAACATCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgggg                >  1:16043‑M1/1‑149 (MQ=255)
                                                                                                                                        GTTTGGGACAAGGAGCAAAACTCAATGCAGCAAGCGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATGGACCAATCAGGAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgggggg              >  1:276382‑M1/1‑149 (MQ=255)
                                                                                                                                         tgtggGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgc             <  1:399676‑M1/147‑138 (MQ=255)
                                                                                                                                          ttGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcc            <  1:135067‑M1/149‑139 (MQ=255)
                                                                                                                                               agaAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctgatt       <  1:461112‑M1/149‑144 (MQ=255)
                                                                                                                                                  AGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATa    <  2:662044‑M1/149‑1 (MQ=255)
                                                                                                                                                   GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCGGCCCCTGGGGGGGATGGAaatgc   <  1:731932‑M1/149‑3 (MQ=255)
                                                                                                                                                    GAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTGTGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGGTGAGAATACa  <  1:105791‑M1/149‑1 (MQ=255)
                                                                                                                                                    GAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATAATTCAGTGGGGGTGGAATGCCGCAAAAGGATCTGCCTCTGGGGGGGATGGaaatgca  <  2:411342‑M1/149‑4 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
GCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACA  >  NC_000913/1207657‑1207953

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.