New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	955092 =	3 (0.050)	53 (0.930)	48/294	0.2	94.6%	coding (1541/1761 nt)	ycaO	ribosomal protein S12 methylthiotransferase accessory factor
	?	NC_000913	= 1469240	NA (NA)					intergenic (‑91/‑1)	insC1/ydbA	IS2 repressor TnpA/pseudogene, autotransporter homolog; interrupted by IS2 and IS30

TTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAG  >  NC_000913/1469097‑1469388                                                                                                                                                |                                                                                                                                                     ttttCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAAccc                                                                                                                                                 >  1:367255/1‑149 (MQ=31)   ttCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCa                                                                                                                                               <  1:784291/149‑1 (MQ=32)       tgtgtgGTACGCCGTCTGCGATTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTACGTGAAATTGATTGTCTGGAGATTCAGGGGGGAAGTCTAAACCCCAGAac                                                                                                                                           >  2:335485/1‑149 (MQ=11)             gTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACGAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAacttactt                                                                                                                                     <  2:469088/149‑1 (MQ=255)                 gCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGc                                                                                                                                 <  1:809683/149‑1 (MQ=255)                        gCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGAATAATATAAAAACTAGTATTAAGACTATAACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCTAGAACTTACTTGTGCTGATTcc                                                                                                                          >  1:145961/1‑149 (MQ=14)                           tttCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGt                                                                                                                       <  1:144842/149‑1 (MQ=255)                                      cTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGt                                                                                                            <  1:170260/149‑1 (MQ=255)                                         aGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAAGTTACTTATGCTGCTTCCGGGGCGAAAATTGTtaa                                                                                                         >  2:332500/1‑149 (MQ=255)                                            cgctaatcaTCTGTTCGCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTCAACCCCCCCCCTTACTACTGCTGATTCCGGTGCGAAAATTGTgaatta                                                                                                      <  2:323261/145‑3 (MQ=14)                                             atcaatcaTCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGATAATcaa                                                                                                     >  2:128581/1‑149 (MQ=255)                                              tcaatcaTCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAg                                                                                                    <  1:750079/149‑1 (MQ=255)                                                  tcatcTTTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTAc                                                                                                <  1:40989/149‑1 (MQ=255)                                                     tcTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTg                                                                                             >  1:597260/1‑149 (MQ=255)                                                        gTTCGCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAg                                                                                          <  1:11131/149‑1 (MQ=255)                                                            tcCAATGACTAGTCTAAAAACTAGTGTTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGCCAAAACCCCAGAACATACTTATGCTGGTTCCGGTGCGAAAATTGTTCATAAAGGTACTTGCAGGTTc                                                                                      >  1:474080/1‑149 (MQ=21)                                                            tcCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTc                                                                                      >  1:474025/1‑149 (MQ=255)                                                            tcCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTc                                                                                      >  1:413122/1‑149 (MQ=255)                                                            tcCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTc                                                                                      <  1:903422/149‑1 (MQ=255)                                                                 tGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTg                                                                                 <  2:160958/149‑1 (MQ=255)                                                                      aGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGTCaa                                                                            <  2:413122/149‑1 (MQ=255)                                                                       gTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATGCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGAACTTGTAGATTCAATGGGTCAAc                                                                           >  1:95194/1‑149 (MQ=255)                                                                        tCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGATAATAGTTAATAAAGGTACTTGTAGATTCAATTGGTCAACg                                                                          >  2:239271/1‑149 (MQ=255)                                                                         cTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGTCAACGc                                                                         >  2:91309/1‑149 (MQ=255)                                                                          tAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGTCAACGCa                                                                        >  2:771455/1‑149 (MQ=255)                                                                            aaaaCTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTCATAAAGGTACTTGTAGATTCAATTGGTCAACGCAAc                                                                      <  1:556668/149‑1 (MQ=255)                                                                            aaaaCTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTCATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGTCAACGCAAc                                                                      >  1:922003/1‑149 (MQ=255)                                                                                   gTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGTCAACGCAACAGTTAtg                                                               <  2:546184/149‑1 (MQ=255)                                                                                   gTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGTCAACGCAACAGTTAtg                                                               >  2:528232/1‑149 (MQ=255)                                                                                    tATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTg                                                                                 <  1:598088/130‑1 (MQ=255)                                                                                    tATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTg                                                                                 >  2:598088/1‑130 (MQ=255)                                                                                             tagcACGTATTTATGTGATTGTGGTGTGCTGGAGATTCAGGGGGCCAGTCGAAACCCCAGAACTTACTTAGGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATg                                                     <  2:158940/146‑1 (MQ=37)                                                                                             tATTACTTATTTAGTTGATATTGTGTGTCTGTAGATTCAGGGGGCCAGTCTAACCCCCAGAACTTACTTATTCTGATTTCGGGGCGAAAATTGTTAATTAAGGTTCTTGTAGATTCCATTGGTCAACGCCACAGTTATGTGaaaatagg                                                     <  2:87413/149‑5 (MQ=25)                                                                                              accACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACATAAGTAAACATGTTGTCAACGCAACAGTTATGTGAAAACATgg                                                    <  1:228586/147‑1 (MQ=25)                                                                                                   ttATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTg                                               >  1:889457/1‑149 (MQ=255)                                                                                                   ttATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTGACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTg                                               >  2:555059/1‑149 (MQ=255)                                                                                                          aGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGt                                        >  2:267456/1‑149 (MQ=255)                                                                                                            tGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGtct                                      >  1:841317/1‑147 (MQ=255)                                                                                                             gATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGACAACATGGGGTTGCGGAGGtttt                                     <  1:607075/149‑1 (MQ=255)                                                                                                                   ggTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAAt                               <  2:560534/149‑1 (MQ=255)                                                                                                                    gTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATg                              <  1:109761/149‑1 (MQ=255)                                                                                                                     ttGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATga                             <  2:824460/149‑1 (MQ=255)                                                                                                                     tggccTGGATATTCAGGGGGCCAGTCTGAACACCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATga                             <  2:236049/145‑1 (MQ=255)                                                                                                                      tGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGTCAACGCAGCAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATgag                            >  1:211303/1‑149 (MQ=255)                                                                                                                           ggAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGAGGaa                       >  1:254549/1‑149 (MQ=255)                                                                                                                            gagaTTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAAc                      >  1:239590/1‑149 (MQ=255)                                                                                                                                ttCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACAttt                  >  1:624452/1‑149 (MQ=255)                                                                                                                                  cAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTAc                <  1:771455/149‑1 (MQ=255)                                                                                                                                  cAGGGGGCCAGTCCAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTAc                <  2:889457/149‑1 (MQ=255)                                                                                                                                    gggggCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTAAATTGGTCAACGCAACAGTTATGTGAATAGATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACAGTTAcag              >  2:339744/1‑149 (MQ=255)                                                                                                                                      gggCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTCATTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGATTTTTGAATGAGACGAACATTTAcagca            >  2:277181/1‑149 (MQ=255)                                                                                                                                        gCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCaga          <  2:596645/149‑1 (MQ=255)                                                                                                                                        gCCAGTCAAAACCCCAGAACTTAATTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGAAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGAGTTGCGGAGGTTTTCTGAATAAGAGGAACATTTCCAGCaga          >  2:645213/1‑149 (MQ=25)                                                                                                                                            gTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGaa      >  1:447145/1‑149 (MQ=255)                                                                                                                                             tCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGaaa     >  2:79892/1‑149 (MQ=255)                                                                                                                                             tCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGGTAATAAAGGTACTTGTAGATTCAATTGGTCAACGCAACAGTTATGGGAAAGCATGGGGTTACGGAGGTTTTTTGAATGAGACGACACTTTAAAGCAGAgggac     >  2:245238/1‑146 (MQ=21)                                                                                                                                                aaaTCCCAGCACTTACTTATGCGGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGGCAACGCAACAGTTATGTGGAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAg  <  2:747245/149‑1 (MQ=21)                                                                                                                                                aaaCCCCAGAACTTACTTATGCTAATTCAAGTACGATCCTTGTTAATAAAGGTACTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGGGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAg  >  1:228615/1‑149 (MQ=18)                                                                                                                                                |                                                                                                                                                     TTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAG  >  NC_000913/1469097‑1469388

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.