BRESEQ :: Mutation Predictions

breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	annotation	gene	description
MC JC	257,908	Δ776 bp		[crl]	[crl]
RA	1,413,542	A→T	Y67N (TAT→AAT)	ydaC ←	DUF1187 family protein, Rac prophage; putative double‑strand break reduction protein
RA	1,793,898	Δ1 bp	coding (212/552 nt)	btuE ←	glutathione peroxidase
MC JC	1,978,503	Δ776 bp		insB1–insA	insB1, insA
RA	2,093,040	G→A	A215T (GCT→ACT)	hisC →	histidinol‑phosphate aminotransferase
RA	4,117,038	C→A	V62L (GTA→TTA)	glpK ←	glycerol kinase

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1207790 =	19 (0.150)	89 (0.810)	62/264	1.0	80.9%	coding (290/630 nt)	stfP	e14 prophage; uncharacterized protein
*	?	NC_000913	1209619 =	25 (0.230)	89 (0.810)	62/264	1.0	80.9%	pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
*	?	NC_000913	= 1207805	20 (0.160)	100 (0.910)	82/264	0.2	82.4%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
*	?	NC_000913	= 1209602	25 (0.230)	100 (0.910)	82/264	0.2	82.4%	pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
*	?	NC_000913	= 1299498	0 (0.000)	146 (1.220)	109/288	0.0	100%	intergenic (+253/‑1684)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
*	?	NC_000913	1300698 =	0 (0.000)	146 (1.220)	109/288	0.0	100%	intergenic (+1453/‑484)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein