New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2406863	3 (0.040)	78 (0.930)	62/294	0.3	96.3%	intergenic (‑224/‑696)	lrhA/alaA	transcriptional repressor of flagellar, motility and chemotaxis genes/glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase
	?	NC_000913	2996360 =	NA (NA)					intergenic (‑2/+10)	ygeO/insD1	pseudogene, orgA family, part of T3SS PAI ETT2 remnant/IS2 transposase TnpB

ATTTATTTCCAGCGGTATAGCTGATAAATAATCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTT  >  NC_000913/2996215‑2996501                                                                                                                                                  |                                                                                                                                              atttatttCCAGCGGTATAGCTGATAAATAATCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGACGTAGATTCCCATGGTTGTTTGGaa                                                                                                                                            >  2:581502/1‑148 (MQ=255) atttatttCCAGCGGTATAGCTGATAAATAATCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGAt                                                                                                                                            >  1:532570/1‑149 (MQ=255)  tttatttCCAGCGGTATAGCTGATAGATAATCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGAtt                                                                                                                                           >  1:1032653/1‑149 (MQ=255)  tttatttCCAGCGGTATAGCTGATAAATAATCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGAtt                                                                                                                                           >  1:1284221/1‑149 (MQ=255)   ttatttCCAGCGGTATAGCTGATAAATAATCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGAttt                                                                                                                                          >  1:1176930/1‑149 (MQ=255)        tCCAGCGGGATAGCTGATAAATAATCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGAGAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGcccc                                                                                                                                     >  2:625129/1‑149 (MQ=255)          cAGCGGTATAGCTGATAAATAATCCCTTAGTACATCAGTAACCTTATAACAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACGGATCAATGGAAGTAAATTCCATTTGTTTATTTGATTTGCACCta                                                                                                                                   >  1:455029/1‑149 (MQ=255)          cAGCGGTATAGCTGATAAATAATCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATGGTTTATTGGATTTGCCCCta                                                                                                                                   >  1:648539/1‑149 (MQ=255)                 ataGCTGATAAATAATCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTATCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTcc                                                                                                                            <  2:1039658/149‑1 (MQ=255)                    gCTGATAAATAATCCCTTAGTACATCAGGAACCTTATAAAAAAACCCTCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATCCGTGATTGGATTTCCACCTAAATTTccgaa                                                                                                                         >  2:1377562/1‑146 (MQ=255)                    gCTGATAAATAATCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGa                                                                                                                         <  2:492082/149‑1 (MQ=255)                      tGATAAATAATCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACa                                                                                                                       >  1:64747/1‑149 (MQ=255)                       gATAAATAATCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACAt                                                                                                                      <  1:1013133/149‑1 (MQ=255)                        ataaataaTCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATc                                                                                                                     >  1:576774/1‑149 (MQ=255)                         taaataaTCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCt                                                                                                                    <  1:1190138/149‑1 (MQ=255)                            ataatCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGtt                                                                                                                 <  1:815557/149‑1 (MQ=255)                            ataatCCCTTAGTACATCAGGAACCTTACAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGCAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACCTCTGtt                                                                                                                 >  1:786678/1‑149 (MQ=255)                             taatCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTa                                                                                                                <  1:819532/149‑1 (MQ=255)                               atCCCTTAGTACATCAGCAACCTTATAAAACAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATc                                                                                                              <  1:644428/149‑1 (MQ=255)                                 cccTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCAc                                                                                                            <  2:265218/149‑1 (MQ=255)                                  ccTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACt                                                                                                           <  1:858753/149‑1 (MQ=255)                                   cTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTAATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACtt                                                                                                          >  2:67510/1‑149 (MQ=255)                                     tAGTACATCAGGAACCTTATAAAAAACCCCGCCTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATAGAAGTAAATTCCAATTGTTTATTGGATTTGCCCGTATATTTCCAGACATCTGTTATCACTTaa                                                                                                        <  1:906967/149‑1 (MQ=255)                                     tAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTaa                                                                                                        <  1:1109657/149‑1 (MQ=255)                                            tCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATGGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTa                                                                                                 <  1:279987/149‑1 (MQ=255)                                               ggACCCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATCCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACaa                                                                                              <  1:312514/149‑1 (MQ=255)                                                gAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAg                                                                                             >  1:593445/1‑149 (MQ=255)                                                 aaCCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGCTCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATGTGTTATCACTTAACCCATTACAAGc                                                                                            >  1:856644/1‑149 (MQ=255)                                                    cTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCg                                                                                         <  2:1108467/149‑1 (MQ=255)                                                    cTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCg                                                                                         >  1:982831/1‑149 (MQ=255)                                                    cTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCg                                                                                         <  2:907016/149‑1 (MQ=255)                                                    cTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCg                                                                                         >  2:808651/1‑149 (MQ=255)                                                     ttATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAACGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGc                                                                                        <  2:1046836/149‑1 (MQ=255)                                                        taAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTCTCACTTAACCCATTACAAGCCCGCTGc                                                                                     >  1:262062/1‑149 (MQ=255)                                                        taAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGc                                                                                     <  2:143827/149‑1 (MQ=255)                                                        taAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGc                                                                                     >  2:610092/1‑149 (MQ=255)                                                           aaaaaCCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGc                                                                                  <  2:244080/149‑1 (MQ=255)                                                               aCCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGat                                                                              >  2:785865/1‑149 (MQ=255)                                                                  cgcgTTCTGCAAACGTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGGTTATTGGATTTGCCCCTAGATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATAtt                                                                           <  2:59192/149‑1 (MQ=255)                                                                        cTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTg                                                                     <  1:594306/149‑1 (MQ=255)                                                                          gCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGgc                                                                   >  2:709195/1‑149 (MQ=255)                                                                           cAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGgcg                                                                  >  1:1294326/1‑149 (MQ=255)                                                                           cAAACCTTTCTCAATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCAAGACATCTGTTGTCACTTAACCCATTACAACGCCGCTGCCGCAGATATCCCCGTGgcg                                                                  >  2:25759/1‑149 (MQ=25)                                                                            aaaCCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGgcga                                                                 <  1:808651/149‑1 (MQ=255)                                                                             aaCCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGgcgag                                                                <  1:1125556/149‑1 (MQ=255)                                                                                   tctcGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATaa                                                          <  2:1032653/149‑1 (MQ=255)                                                                                    ctcGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAAc                                                         >  2:1210315/1‑149 (MQ=255)                                                                                     tcGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGCGCGATAAcc                                                        >  1:541534/1‑149 (MQ=255)                                                                                       gATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCAATTATAATTCAGGGAGCCCTCTCCCGCAGATATTCCCGTGGCGAGCGATAACCCa                                                      >  1:800359/1‑149 (MQ=21)                                                                                        aTAAAAGTGACAACCACTTAGTAAACACATCAATGGAACTAAATTCCAATTGTTTATTGGATTTCCCCCTATATTTCCAGACAACTATTATCACTTAACCCATTACAACCCCGCTGCCCCACATATTCCCATACCGAACGATAACCCac                                                     <  2:1199114/149‑2 (MQ=255)                                                                                           aaggTGACGACCACTGAGTAAAGAGATCAATGGAAGTAAAGTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAgcgc                                                  <  1:290770/146‑1 (MQ=255)                                                                                              gttataaCCACTTAGTAAACAGATCCATGGAAGTAAATTCCAATTGATAATTGTATCTGCCCTTCTATTCCCAGACATCTGAAATCACTTAACCCAGTACAATCCCACTGCCGCAGATATTCCCGTAGCGAGAGATAACCCAGTGCACt                                               <  2:455029/144‑1 (MQ=255)                                                                                              gTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGGGATAACCCAGCGCACt                                               >  1:648722/1‑149 (MQ=255)                                                                                                  cAACCACTGAGTAAACAGATCAATGGCAGTATGGACGATTTTGTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATga                                           >  1:683454/1‑148 (MQ=14)                                                                                                   aaCCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCg                                          >  2:582616/1‑149 (MQ=255)                                                                                                   aaCCACTGAGTAAACAGATCAATAGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCg                                          >  1:753070/1‑149 (MQ=255)                                                                                                     ccACTAAGTAAACATATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTAGGCGGa                                        >  2:308354/1‑149 (MQ=255)                                                                                                      cACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGAt                                       <  1:348179/149‑1 (MQ=255)                                                                                                      cACTGAGCAAACAGATCAATGGAAGTAAATTCCAATTCTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGAt                                       <  1:909968/149‑1 (MQ=255)                                                                                                         tGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGcc                                    >  1:836385/1‑149 (MQ=255)                                                                                                           aGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCAt                                  <  1:224081/149‑1 (MQ=255)                                                                                                             tAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCTTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTc                                <  1:347727/149‑1 (MQ=255)                                                                                                               aaCAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGCTAACCCAGCGCACTATGGGGATGCCATACGt                              >  2:396164/1‑149 (MQ=255)                                                                                                                 cAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTta                            <  2:548455/149‑1 (MQ=255)                                                                                                                 cAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGACGCCATTCGTta                            <  2:14558/149‑1 (MQ=255)                                                                                                                  aGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTCCGCGGGTGCCATTCGttct                           >  1:1219216/1‑147 (MQ=255)                                                                                                                  aGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTtat                           >  1:31429/1‑149 (MQ=255)                                                                                                                  aGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTtat                           >  1:825034/1‑149 (MQ=255)                                                                                                                   gATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTtata                          <  1:993405/149‑1 (MQ=255)                                                                                                                    aTCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATaa                         <  1:564927/149‑1 (MQ=255)                                                                                                                    aTCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATCGCATTCGTTATaa                         >  2:511111/1‑149 (MQ=255)                                                                                                                       aaTGGAAGTAAATTCCAATTGTTTAGTGCATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATACCCGTGGCGAGCGATAACCCAGCGCCCTATGCGGATGCCATTCGTTGTAATGc                      >  1:786153/1‑149 (MQ=14)                                                                                                                         tGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGTGTGGTAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTc                    <  1:886920/149‑1 (MQ=255)                                                                                                                            aaGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGaa                 <  1:1242529/149‑1 (MQ=255)                                                                                                                            aaGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGaa                 >  2:934523/1‑149 (MQ=255)                                                                                                                                aaaTTCCAAGTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGcc             <  2:532570/149‑1 (MQ=255)                                                                                                                                  aTTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTGAGATGCCCGAACGCctc           >  1:661391/1‑149 (MQ=255)                                                                                                                                   ttCGAATTGTTTATTGGATTTGCCCCTATATTTCCAGACTTCTGTTATCACTTAACTCATTACAAGCCCGCTGCCGCATATCTGCCCGTGGCGAGCGATAACCCATCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCctct          <  2:391774/149‑1 (MQ=11)                                                                                                                                    tCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCGCGAACGCCCCTg         >  2:1008126/1‑149 (MQ=255)                                                                                                                                     ccAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGc        <  2:593445/149‑1 (MQ=38)                                                                                                                                       aaTTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATCCGTCATAATGCTCGAGCGCCTCTGCaa      >  1:528994/1‑149 (MQ=255)                                                                                                                                       aaTTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTATTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATCTTCCTGTGGCGAGCGATCACCCAGCGCACTATGCGGATGCCATTCGTTTTAATGCTCGAACGCCTCCGCaa      >  1:297541/1‑149 (MQ=11)                                                                                                                                         ttGTTTATTGGATTTGCCCCTATATGTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAgg    <  2:1176930/149‑1 (MQ=21)                                                                                                                                           gTTTATTGGATTTGCCCCTATATTTCCAGGCATCTGTTATAACTTTATACAAAACAAGACCTGACCCGGAGGTATTCCCGTGGCGAGCGATAACCCAGCGCACTCTGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGtt  >  1:331734/1‑149 (MQ=11)                                                                                                                                                  |                                                                                                                                              ATTTATTTCCAGCGGTATAGCTGATAAATAATCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTT  >  NC_000913/2996215‑2996501

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.