New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1651547	NA (NA)	90 (1.070)	73/294	0.1	97.8%	intergenic (+10/‑4)	insD1/intQ	IS2 transposase TnpB;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related
	?	NC_000913	1652253 =	2 (0.020)					pseudogene (703/1158 nt)	intQ	pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related

GCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1651400‑1651547 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGA  >  NC_000913/1652253‑1652399                                                                                                                                                                                                                                                                                                         GCAACGAACCTTGCAGAGGCGTTTGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCA                                                                                                                                                    <  1:122512/149‑1   AAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGCTAACAGATGTCTGGAAATATAGGGGCAAAGCCATT                                                                                                                                                  >  2:1200058/1‑149    AAGAACCTTGCAGAGGCGTTCGAGGATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTA                                                                                                                                                 >  1:708400/1‑149     ccgatcgTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAA                                                                                                                                                <  2:551384/142‑1       AACCTTGCAGAGGCGTTCGAGCTTTATTACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGC                                                                                                                                              <  1:1007707/149‑1       AACCTGGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAtac                                                                                                                                              <  2:310286/149‑4          ccgGCAGAGTCTTTCGAGCATTAGAACGAATGGCAGCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAG                                                                                                                                           <  2:615189/146‑1            TGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATCTCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATACCAGACGTCCGGAAATCAAGCGGCACATCCATTAAGCCAGCc                                                                                                                                         >  2:490934/1‑148            TGCAGAGGCGTTCGAGCATTATAACGAATGCCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGTGTTAAGGGATATCAGTTGTCTGGAAATATAGGGTCAAATCCATTAAGCCCGCA                                                                                                                                         >  2:1016063/1‑149              CAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAAT                                                                                                                                       >  1:1215179/1‑149               AGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATa                                                                                                                                      >  2:66831/1‑148                 AGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGA                                                                                                                                    >  2:1300923/1‑149                   GCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACG                                                                                                                                  <  2:152914/149‑1                     GTTCGAGCATTATAACGAATGGCACCCGCATAGTCCACAGTGACATCGCACGCCACGGGAATAACTCCGCCAGCGGGCCTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATAAAGCCAGCAATCGACGCT                                                                                                                                >  2:586254/1‑149                       TCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGAGGCTtc                                                                                                                              >  1:452199/1‑147                         GAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCC                                                                                                                            >  2:934511/1‑149                         GAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCC                                                                                                                            >  1:934841/1‑149                            CATTATAACGAAGGGCATGCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATTTCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATTTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGA                                                                                                                         <  2:160948/149‑1                              TTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCCAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGT                                                                                                                       >  1:866003/1‑149                              TTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGT                                                                                                                       >  1:1064870/1‑149                               TATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAGTCCATTAAGCCAGCAATCGACGCTCTCCGGAGTC                                                                                                                      >  2:515298/1‑149                                 TAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAG                                                                                                                    >  1:414717/1‑149                                  AACGAATGGCATCCGCATAGCGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGA                                                                                                                   <  1:1119053/149‑1                                   gCGACTGGCACCCGCATAGTGCCTTGGGTTAGCGCTCGCCACGGGAATTTCGGGGGCAGCGTGCTTGTAATGGGTTACGTGAGAACAGACGTCTGTAGATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGAT                                                                                                                  <  2:818603/148‑1                                   ACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGGGTCAGAT                                                                                                                  >  1:736898/1‑149                                      aagtggcTCCGCGTGGTGCGCGGGGTTATCGCTCGCCCCGGGAATATCTGCGGCAGCGGGCGTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGAC                                                                                                               <  2:16039/142‑1                                       ATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACA                                                                                                              >  1:423613/1‑149                                        TGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGGGTCAGATGACAT                                                                                                             >  2:977437/1‑149                                            ATCCGCCTAGTGCGCGGGGTTATCTCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAAC                                                                                                         <  2:1255967/149‑1                                            ATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCGCTCCGGAGTCAGATGACATTAAC                                                                                                         >  1:966056/1‑149                                            ATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAAAAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAAC                                                                                                         <  1:811623/149‑1                                             TCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACG                                                                                                        >  1:65282/1‑149                                             TCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACG                                                                                                        <  2:1061375/149‑1                                               CGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAG                                                                                                      <  1:1090996/149‑1                                                      TGCGCTGGGTTATCGCTCGACAAGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAGCAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGC                                                                                               <  1:292648/149‑1                                                         GCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGGAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAA                                                                                            >  1:899285/1‑149                                                         GCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAA                                                                                            <  1:405247/149‑1                                                            GGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAG                                                                                         <  1:556727/149‑1                                                             GGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGC                                                                                        >  2:732949/1‑149                                                               TTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCAAGCAATCGACGCCCTCCGNAGGCACATGACATAAACGAGACTGAACCAAGAGCAa                                                                                      >  2:317678/1‑148                                                                   CGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATTTAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGGCAGATGAAATTAACGAGACTGAGCACAGAGAATATCA                                                                                  >  1:1335493/1‑149                                                                   CGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGCGCAAAGAGCCTATCA                                                                                  >  1:1335546/1‑149                                                                    GCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCAT                                                                                 >  1:355859/1‑149                                                                     ccgGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATT                                                                                <  2:974864/146‑1                                                                     CTCGCCACGGGAATATCTGCGGCAGCGGGCTATTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATT                                                                                <  1:877575/149‑1                                                                      tgGCCACGGGAATAGCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGAGGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTG                                                                               <  2:107688/147‑1                                                                          CACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGGTGTCTGGAAATATAGGGGGAAATCCATTAAGCCAGCAATCGACGCGCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCACATCATTGATGg                                                                           >  1:439305/1‑148                                                                           ACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTT                                                                          <  2:1074588/149‑1                                                                                AATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTT                                                                     <  1:818533/149‑1                                                                                  TATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCA                                                                   <  2:65282/149‑1                                                                                     CTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAG                                                                >  1:1194136/1‑149                                                                                            AGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGTCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGG                                                         <  2:1013924/149‑1                                                                                            AGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGG                                                         <  2:183350/149‑1                                                                                            AGCGGGCTTGTAATGGGGTAAGTGATAACAGATGTCTGGAAAGATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATAACATTGATGTTCACTTCCGAGAGTATGG                                                         >  2:1276648/1‑149                                                                                              CGGGCTTGTAATGGGTTAAGTGATAACAGAGGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCA                                                       <  1:474323/149‑1                                                                                               GGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAG                                                      >  1:892513/1‑149                                                                                                 GCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAcac                                                    >  1:113355/1‑146                                                                                                   TTGTAATGGGTTAAGTGATAACAGATGTCGGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACA                                                  <  1:577245/149‑1                                                                                                   TTGTAATGGGTTAAGGGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCGCGCGGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACA                                                  >  2:1046826/1‑149                                                                                                         TGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAA                                            <  2:1114341/149‑1                                                                                                            GTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAA                                         <  1:1300923/149‑1                                                                                                            GTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGATCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGAAGAACAGAAAAACAA                                         >  2:990124/1‑149                                                                                                            GTTAAGTGATAACAGAGGTCTGGAAATATAGGGCCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAA                                         >  1:889886/1‑149                                                                                                             TTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCGATTAAGCCAGCAAACGATGCACTCCGGAGACAGATGACATTAACGAGACTGAGCAAAGAGCGTATAATTGATGTTCACTTAAGAGAGCATGGCAGCACAGAAAAACGAA                                        >  2:293761/1‑149                                                                                                             TTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGATGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAA                                        >  2:956635/1‑149                                                                                                              TAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAA                                       <  2:558053/149‑1                                                                                                                 GTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATG                                    >  2:232398/1‑149                                                                                                                  TGATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTGCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGGACAGAAAAACGAAAATGC                                   >  2:917812/1‑149                                                                                                                   GATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAA                                                    >  1:996286/1‑131                                                                                                                   GATAACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAA                                                    <  2:996286/131‑1                                                                                                                       ACAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTT                              >  1:639709/1‑149                                                                                                                        CAGATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTCTGGCCGAACAGAAAAACAAAAAAGCCCCTTT                             >  2:457786/1‑149                                                                                                                           ATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGACACGAAATCCAAAAATGCACCTTTGTT                          >  1:378532/1‑149                                                                                                                           ATGTCTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAAAAAAAAAAAACAAAAATGCACCTTTGTT                          <  2:1064870/149‑1                                                                                                                           ATGTCTGGAAATATAGGGACAAATCCATTAAGCCAGCAATCGACGCACTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGGATGGCAGAACAGAAGAACACCAATGCAACGTTGTg                          >  1:106373/1‑148                                                                                                                               CTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACATAAAAACAAAAATGCACCTTTGTTTTTC                      <  2:127139/149‑1                                                                                                                               CTGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTC                      <  1:732949/149‑1                                                                                                                                TGGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCA                     >  1:1139694/1‑149                                                                                                                                 ttAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAA                    <  2:267839/147‑1                                                                                                                                 GGAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAAACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAA                    >  2:127020/1‑149                                                                                                                                  GAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAAC                   >  2:396068/1‑149                                                                                                                                  GAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAAC                   >  2:928411/1‑149                                                                                                                                  GAAATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAAC                   >  2:968355/1‑149                                                                                                                                    AATATAGGGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCT                 <  2:892513/149‑1                                                                                                                                         AGGGGCAAATCCATTAGGCCAGCAATCGACGCGCTCCGTAGTCAGATGACATTAACGAGACTGAACAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGT            <  2:1358388/149‑1                                                                                                                                           GGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGT          >  2:1383285/1‑149                                                                                                                                           GGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGT          >  1:1382792/1‑149                                                                                                                                           GGGCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGACCCTTTGTTTTTCAACCTGAAGTGT          >  1:485839/1‑149                                                                                                                                             GCAAATCCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGGAAAAAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAAAACAGAAAAACAAAAATGCACCTTTGGTTTTCAACCTGAAGGGTCA        >  2:603445/1‑149                                                                                                                                                   CCATTAAGCCAGGAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGA  <  2:194478/149‑1                                                                                                                                                   CCATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGA  <  2:1194136/149‑1                                                                                                                                                                                                                                                                                                         GCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1651400‑1651547 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGA  >  NC_000913/1652253‑1652399

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.