| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4295973 = | 29 (0.660) | 6 (0.140) | 3/262 | NT | 17.9% | noncoding (140/602 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites |
| ? | NC_000913 | 4296067 = | NA (NA) | noncoding (234/602 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
ACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCGTTGATGTCGGATGCGGCGTAAACGCCTTATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4296126‑4295973‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCA‑ATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCA > NC_000913/4296067‑4296213 tCGCTAAAGCAGGCTATTGCGCTGGCTGGCGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCGTTGATGTCGGATGCGGCGTAAACGCCTTATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGC < 2:475309/148‑1 GCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCGTTGATGTCGGATGCGGCGTAAACGCCTTATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCT > 1:558896/1‑149 CTAAACCAGGCTCTTGCGCTGTCTGGCCTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCGTTGATGTCGGATGCGGCGTAAACGCCTTATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTG < 2:461857/149‑1 TATTGCGCTGTCTGGCGTAGGCCTGATAAGACGTGGCAAGCGTCGCATCAGGCGTTGATGTCGGATGCGGCGTAAACGCCTTATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGC > 1:502307/1‑135 TATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCGTTGATGTCGGATGCGGCGTAAACGCCTTATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGC < 2:502307/135‑1 CTGTCTGGGTTAGGCCTGATGAGCTGCGGAAAGCGTCGCATCGGGCCTTGTTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACAAAATCGCGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGTTGCGACGCTTAACGCGT < 2:125719/149‑1 agaTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCGTTGATGTCGGATGCGGCGTAAACGCCTTATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATGCGACGCTTAACGCGTCTTATCA < 1:649179/146‑1 CCTGATGAGACGCGGCAAGCGTCGCATCAGGCATTGATGTCGGATGCGGCGTGAACGCCTTATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTAC < 2:433693/149‑1 CCTGACAAGACGCGTTCAGCGTCGCATCAGGCGTTGATGTCGGATGCGGCATAAACGCCTTATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAC < 1:747768/149‑1 GGCAAGCGTCGCATCAGGCGTTGAGGTCGGATGCGGAGAAAACGCCTTATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCA < 1:102719/149‑1 ACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTG > 1:96395/1‑47 ACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTG < 2:96395/47‑1 TGCGCTGTCTGGCGTAGGCCTGATAAGACGCGTTAAGCGTCGCATCAGGCCTACGCCAGACAGCGCA‑ATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTgcc > 1:247314/1‑146 ggtgtcaAGGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACCCCAGACAGCGCA‑ATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTA < 2:683130/142‑1 CTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCA‑ATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACG > 1:699491/1‑149 CTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCA‑ATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCC > 2:124040/1‑96 CTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCA‑ATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCC < 1:55523/96‑1 CTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCA‑ATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCC > 2:55523/1‑96 CTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCA‑ATAGC > 2:275496/1‑53 CTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCA‑ATAGC > 1:594423/1‑53 CTGATGCGACGCTTGCCGCGTCTTACCAGGCCTACGCCAGACAGCGCA‑ACCGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACG < 1:22308/149‑1 CTGATGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCA‑ATAGC < 2:594423/53‑1 ATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCACACAATCAG‑GTGATCGTGATTTTGTAGGTCGGCTAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCA < 1:22857/149‑1 ACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCGTTGATGTCGGATGCGGCGTAAACGCCTTATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4296126‑4295973‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCA‑ATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCA > NC_000913/4296067‑4296213 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |