Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_000913 4,188,484 Δ27 bp 100% coding (3136‑3162/4224 nt) rpoC → RNA polymerase, beta prime subunit

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4188484 4188510 27 84 [0] [0] 84 rpoC RNA polymerase, beta prime subunit

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 41884830 (0.000)74 (1.170) 57/268 NT 100% coding (3135/4224 nt) rpoC RNA polymerase, beta prime subunit
?NC_000913 4188511 = 0 (0.000)coding (3163/4224 nt) rpoC RNA polymerase, beta prime subunit

AGTACCTTACGGTGCGGTACTGGCGAAAGGCGATGGCGAACAGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCG  >  NC_000913/4188336‑4188628
                                                                                                                                                   |                                                                                                                                                 
aGTACCTTACGGTGCGGTACTGGCGAAAGGCGATGGCGAACAGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCg                                                                                                                                                  <  2:74230‑M1/149‑2 (MQ=255)
   aCCTTACGGTGCGGTACTGGCGAAAGGCGATGGCGAACAGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCCAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtc                                                                                                                                               <  1:1022937‑M1/149‑5 (MQ=255)
    ccTTACGGTGCGGTACTGGCGAAAGGCGATGGCGAACAGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtct                                                                                                                                              <  1:907875‑M1/149‑6 (MQ=255)
      ttACGGTGCGGTACTGGCGAAAGGCGATGGCGAACAGGTTGCTGGCGGCGAAACCGGTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTGTTGTACGCGTTACTGACTTGCTCGCCGGCCAGGCCggtgcgt                                                                                                                                            >  1:482718‑M1/1‑142 (MQ=255)
        aCGGTGCGGTACTGGCGAAAGGCGATGGCGAACAGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTGTTGTACGCGTTACTGACATGATCGACGGCCAGGCCggtctgtct                                                                                                                                          >  2:910062‑M1/1‑140 (MQ=255)
        aCGGTGCGGTACTGGCGAAAGGCGATGGCGAAACGTTTGCTGGCGGCGAAACCGTTGCAAGCTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctggct                                                                                                                                          >  2:819118‑M1/1‑140 (MQ=255)
                gTACTGGCGAAAGGCGATGGCGAACAGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggt                                                                                                                                  <  2:769804‑M1/149‑18 (MQ=255)
                gTACTGGCGAAAGGCGATGGCGAACAGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggt                                                                                                                                  >  2:160998‑M1/1‑132 (MQ=255)
                  aCTGGCGAAAGGCGATGGCGAACAGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtgg                                                                                                                                >  2:889167‑M1/1‑130 (MQ=255)
                      gCGAAAGGCGATGGCGAACAGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttct                                                                                                                            >  1:30180‑M1/1‑126 (MQ=255)
                      gCGAAAGGCGATGGCGAACAGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCgggctgtcttcgctggtggttct                                                                                                                            >  1:428898‑M1/1‑126 (MQ=255)
                       cGAAAGGCGATGGCGAACAGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctg                                                                                                                           <  1:860822‑M1/149‑25 (MQ=255)
                        gAAGGGCGATGGCGAACATGTTGCTGGCGCCGAAACCGTTGCAACCTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACTGCCAGACCggtctgtcttcgctggtggttctgg                                                                                                                          <  2:892501‑M1/149‑26 (MQ=255)
                           aGGCGATGGCGAACCGGTGGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCATCCCATGCCGGTTATCACCGGAGTACGCGGTTTTTTACGCTTTACTGACATGGTCGAGGGCCAGACCgggctgtcttctctgggggtgctggatt                                                                                                                       <  2:516803‑M1/149‑29 (MQ=255)
                           aGGCGATGGCGAACAGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggatt                                                                                                                       <  1:1069327‑M1/149‑29 (MQ=255)
                                aTGGCGAACAGGCTGCTGGCGGCGAACCCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgca                                                                                                                  <  2:1011736‑M1/149‑34 (MQ=255)
                                   gCGAACAGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaa                                                                                                               >  1:874521‑M1/1‑113 (MQ=255)
                                     gAACAGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGCCGGCCAGACCggtctgtcttcgctggtggttctcggttccgcagaacg                                                                                                             >  1:345353‑M1/1‑111 (MQ=255)
                                     gAACAGGTTGCTGGCGGCGAAACCGTTGCAAACAGGGACCCGCACACGATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacg                                                                                                             >  1:741777‑M1/1‑111 (MQ=255)
                                        cagtgtgctggCGGCGAAACCGTTTCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtac                                                                                                          <  1:653968‑M1/144‑42 (MQ=255)
                                        cAGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtac                                                                                                          <  1:536011‑M1/149‑42 (MQ=255)
                                           gTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaccgtaccgc                                                                                                       >  1:193017‑M1/1‑105 (MQ=255)
                                            ttGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgca                                                                                                      >  1:412402‑M1/1‑104 (MQ=255)
                                              gCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcagg                                                                                                    <  2:552560‑M1/149‑48 (MQ=255)
                                                 ggcggcGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTATGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtgg                                                                                                 <  2:1107663‑M1/149‑51 (MQ=255)
                                                  gcggcgAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGGTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggt                                                                                                >  1:177366‑M1/1‑98 (MQ=255)
                                                  ccggcggaCCCGTGCCAAACTGGGACCCGCACACGCTCCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGTCATGATCGACGGCCAGACCggtctgtcttcgctggtggttcttgattccgcagaacgtaccgcaggtggt                                                                                                <  2:755963‑M1/148‑52 (MQ=255)
                                                      cgAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttcaggattccgcagaacgtaccgcaggtggtaaag                                                                                            >  1:785472‑M1/1‑94 (MQ=255)
                                                        aaaCCGTTGCAAACTGGGACCCGCACCCCATGCCGGTTATCACCGAAGTAAGCGGTTTTGCACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctgtattccacttatgctaccgcagctggtaaagat                                                                                          <  2:824096‑M1/149‑58 (MQ=255)
                                                          aCCGTTGCAAACTGGGCCGGCCACACCGTGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatct                                                                                        <  2:1096413‑M1/149‑60 (MQ=255)
                                                           ccGTTGCAAACTGGGCCCCGCACCCCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctg                                                                                       <  2:1020966‑M1/149‑61 (MQ=255)
                                                             gTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcg                                                                                     >  1:763623‑M1/1‑87 (MQ=255)
                                                                 cAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccg                                                                                 >  1:998895‑M1/1‑83 (MQ=255)
                                                                 cAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGAACTGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccg                                                                                 <  2:698738‑M1/149‑67 (MQ=255)
                                                                 cAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTCTGTACGCTTTACTGACATGCTAGACGACCAGACCggtctgtcttcgctggtggctctggcttccgcagaacgtaccgcaggggggaacgatctgcggcgg                                                                                 >  2:431470‑M1/1‑83 (MQ=255)
                                                                  aacctggGTCCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccgg                                                                                <  2:1120461‑M1/146‑68 (MQ=255)
                                                                  aaaCTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCCTTACCGACATGATCGACGGCCAGACCggtctgtcttcgctggtggtgctggagtccgcagaccatcccgcaggtggtaaagatctgcgtccgg                                                                                >  2:736366‑M1/1‑82 (MQ=255)
                                                                  aaaCTGGGACCCGCACACCATGCCGGTTAGCACCGAAGTAAGCGGTTTTGTACGCTTTACTGAGATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattcggcagaacgtaccgcaggtggtaaagatctgcgtccgg                                                                                >  1:749216‑M1/1‑82 (MQ=255)
                                                                   aaCTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggc                                                                               >  1:414766‑M1/1‑81 (MQ=255)
                                                                     cTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcac                                                                             <  1:742143‑M1/149‑71 (MQ=255)
                                                                       gggACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactg                                                                           <  1:575241‑M1/149‑73 (MQ=255)
                                                                            ccGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaacgatctgcgtccggcactgaaaat                                                                      >  1:922589‑M1/1‑72 (MQ=255)
                                                                              gCACCCCATGCCGTTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatcg                                                                    <  2:367580‑M1/149‑80 (MQ=255)
                                                                              gCACACCATGCCGGTTATCACCGGAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggtatacgcagaacgtaccgcaggtgggaaagatctgcgtccggcactgaaaatcg                                                                    >  1:606804‑M1/1‑70 (MQ=255)
                                                                              gCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtcaagagctgcgtccgccactgaaaatcg                                                                    >  2:1070728‑M1/1‑70 (MQ=255)
                                                                              gCACACCATGCCGGTTATCACCGAAGTAAGCGGGTTTGTACGCTCAACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtcccgcactgcaaagcg                                                                    >  2:297029‑M1/1‑70 (MQ=255)
                                                                                   ccAGGCCGGTTATCACCGAAGGAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatcgttgat                                                               <  1:83242‑M1/149‑85 (MQ=255)
                                                                                    cATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACAGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatcgttgatg                                                              >  2:417986‑M1/1‑64 (MQ=255)
                                                                                         cGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatcgttgatgctcag                                                         >  2:652551‑M1/1‑59 (MQ=255)
                                                                                           gTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatcgttgatgctcaggg                                                       >  1:541152‑M1/1‑57 (MQ=255)
                                                                                                 aCCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatcgttgatgctcagggtaacga                                                 >  2:1053692‑M1/1‑51 (MQ=255)
                                                                                                  ccGAAGTAAGCGGTTTTGTCCGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatcgttgatgctcagggtaacgac                                                <  2:412402‑M1/149‑100 (MQ=255)
                                                                                                   cGAAGTAAGCGGTTTTGTACGCGTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatcgttgatgctcagggtaagtacg                                               >  1:617346‑M1/1‑49 (MQ=255)
                                                                                                     aaGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcatgtggtaaagatctgcgtccggcactgaaaatcgttgacgctcagggtaacgacgtt                                             <  2:741777‑M1/149‑103 (MQ=255)
                                                                                                     aaGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatcgttgatgctcagggtaacgacgtt                                             >  1:350522‑M1/1‑47 (MQ=255)
                                                                                                      aGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatcgttgatgctcagggtaacgacgttc                                            <  1:778197‑M1/149‑104 (MQ=255)
                                                                                                         aaGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcagctggtaaagatctgcgtccggcactgaaaatcgttgatgctcagggtaacgacgttctga                                         <  2:847198‑M1/149‑107 (MQ=255)
                                                                                                             ggTTTTGTACGCTTTACCGACATGACCGACGGCCCGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtgctaaacatcggcgtccggcactgaaaatcgttgatgctcagggtaacgacgttctgatccc                                     <  1:612526‑M1/149‑111 (MQ=255)
                                                                                                                   gTACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatcgttgatgctcagggtaccgacgttctgatcccaggtac                               >  1:155094‑M1/1‑33 (MQ=255)
                                                                                                                    tACGCTTTACTGACATGATCGACGGCCAGACCggtctgtcttcgctgggggttcgggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggccctgaaaatcgttgatgctcagggtaacgccgttctgatcccaggtacc                              >  2:158726‑M1/1‑32 (MQ=255)
                                                                                                                         tttACTGACCTGGTCGAGGGCCAGACCgggctgtcttcgcttgttgttctggattccgcagaacgtaccgcaggcggtaaagatctgcgtccggcactgaaaatcgttgatgctcagggtaacgacgttctgatcccaggtaccgatat                         <  2:307740‑M1/149‑123 (MQ=255)
                                                                                                                         tttACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtcccgcaggtggtaaagatctgcgtccagcaatgcaagtcgttgatgcgcagggaaacgacgttctgatcccaggtacagatgt                         >  2:322460‑M1/1‑27 (MQ=255)
                                                                                                                         tttACTGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatcgttgatgctcagggtaacgacgttctgatcccaggtaccgatat                         <  2:681090‑M1/149‑123 (MQ=255)
                                                                                                                           tACTGACGTGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatcgttgatgctcagggtaacgacgttctgctcccaggtaccgatatgc                       <  2:743948‑M1/149‑125 (MQ=255)
                                                                                                                           tACTCACTTGATCCACGGCCAGACCtgtctgtcttcgctggtctttctggattccgcaaaacgtaccgcaagttttaaagatctgcgtccggcactgaaaatcgttgatgctcagggtaacgacgttctgatcccaggtaccgatatgc                       <  1:523158‑M1/149‑125 (MQ=255)
                                                                                                                              tGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatcgttgatgctcagggtaacgacgttctgctcccaggtaccgatatgccag                    >  1:149362‑M1/1‑22 (MQ=255)
                                                                                                                              tGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatcgttgatgctcagggtaacgacgttctgatcccaggtaccgatatgccag                    >  1:282659‑M1/1‑22 (MQ=255)
                                                                                                                              tGACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatcgttgatgctcagggtaacgacgttctgatcccaggtaccgatatgccag                    >  1:761322‑M1/1‑22 (MQ=255)
                                                                                                                               gACATGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatcgttgatgctcagggtaacgacgttctgatcccaggtaccgatatgccagc                   >  1:335143‑M1/1‑21 (MQ=255)
                                                                                                                                  ttgATCGGCGGCCAGACCggtctgtctgcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatcgttgatgctcagggtaacgacgttctgatcccaggtaccgatatgccagcgca                <  2:97539‑M1/148‑132 (MQ=255)
                                                                                                                                  aTGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatcgttgatgctcagggtaacgacgttctgatcccaggtaccgatatgccagcgca                <  2:350522‑M1/149‑132 (MQ=255)
                                                                                                                                  aTGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatcgttgatgctcagggtaacgacgttctgatcccaggtaccgatatgccagcgca                <  1:1060966‑M1/149‑132 (MQ=255)
                                                                                                                                  aTGATCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatcgttgatgctcagggtaacgacgttctgatcccaggtaccgatatgccaacgca                >  1:1080955‑M1/1‑18 (MQ=255)
                                                                                                                                     aTCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtgcggcactgaaaatcgttgttgctcagggtaacgacgttctgatcccaggtaccgatatgccagcgcagta             >  2:1045719‑M1/1‑15 (MQ=255)
                                                                                                                                     aTCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatcgttgatgctcagggtaacgacgttctgatcccaggtaccgatatgccagcgcagta             <  2:177366‑M1/149‑135 (MQ=255)
                                                                                                                                     aTCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatcgttgatgctcagggtaacgacgttctgatcccaggtaccgatatgccagcgcagta             <  1:1053692‑M1/149‑135 (MQ=255)
                                                                                                                                     aTCGACGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcagggggtaaagatctgcgtccggcactgaaaatcgttgatgctcagggtaacgacgttctgatcccaggtaccgataggccagagcagta             >  1:814062‑M1/1‑15 (MQ=255)
                                                                                                                                         aCGGCCAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatcgttgatgctcagggtaacgacgttctgatcccaggtaccgatatgccagcgcagtacttc         >  2:631360‑M1/1‑11 (MQ=255)
                                                                                                                                             ccAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatcgttgatgctcagggtcacgacgttctgatcccaggtaccgatatgccagcgcagtacttccttc     >  1:46179‑M1/1‑7 (MQ=255)
                                                                                                                                              ccgacCggtcggtcttcgctggtggttcttgattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatcgttgatgctcagggtaacgacgttctgatcccaggtaccgatatgccagcgcagtacttcctgcc    <  1:160998‑M1/147‑144 (MQ=255)
                                                                                                                                              cAGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtacggcactgaaaatcgttgatactcagggtaaggacgttctgatcccaggtaccgatatgccggcgcagtacttactgcc    >  2:698558‑M1/1‑6 (MQ=255)
                                                                                                                                               aGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatcgttgatgctcagggtaacgacgttctgatcccaggtaccgatatgccagcgcagtacttcctgcgg   >  2:645063‑M1/1‑5 (MQ=255)
                                                                                                                                               aGACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatcgttgatgctcagggtaacgacgttctgatcccaggtaccgatatgccagcgcagtacttcctgccg   >  2:645083‑M1/1‑5 (MQ=255)
                                                                                                                                                gACCggtctgtcttcgctggtggttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatcgttgatgctcagggtaacgacgttctgatcccaggtaccgatatgccagcgcagtacttcctgccgg  <  1:1070728‑M1/149‑146 (MQ=255)
                                                                                                                                                   |                                                                                                                                                 
AGTACCTTACGGTGCGGTACTGGCGAAAGGCGATGGCGAACAGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCG  >  NC_000913/4188336‑4188628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: