New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4542683 =136 (0.750)20 (0.120) 18/274 16.6 12.7% intergenic (+49/‑433) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 4542997 = 147 (0.870)intergenic (+363/‑119) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 158 total aligned reads displayed.

GACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTT  >  NC_000913/4542850‑4543145
                                                                                                                                                     |                                                                                                                                                    
    cATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGttt                                                                                                                                                 <  2:1282785/149‑1 (MQ=255)
     aTCTTCCTCATTCTTCTCTCCAAAAACCATCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATGGTAAGCCGACAAATAA‑ACTGAAAAAGTG‑GGCCCGCGATGCTTGCCGCTAGGAGTCAAAATTGCCCCAAATgatcc                                                                                                                                                >  1:2130056/1‑145 (MQ=255)
     aTCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATACACATCCATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTc                                                                                                                                                <  1:243450/149‑1 (MQ=255)
      tCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCa                                                                                                                                               >  1:924516/1‑149 (MQ=255)
       cTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTcct                                                                                                                                              >  2:2528942/1‑147 (MQ=255)
        ttCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAACTAAAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGACCCCAAATTTTTCATc                                                                                                                                             >  2:1773677/1‑149 (MQ=255)
        ttCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATc                                                                                                                                             >  1:1853978/1‑149 (MQ=255)
            tCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCtttt                                                                                                                                         >  1:3019488/1‑149 (MQ=255)
              aTTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTgg                                                                                                                                       >  1:977571/1‑149 (MQ=255)
              aTTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTgg                                                                                                                                       <  1:2297548/149‑1 (MQ=255)
                tcttctCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTgggg                                                                                                                                     <  1:830750/149‑1 (MQ=255)
                  ttctCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGa                                                                                                                                   >  1:844189/1‑149 (MQ=255)
                   tctctcCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaa                                                                                                                                  >  1:500636/1‑149 (MQ=255)
                    ctctcCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaaa                                                                                                                                 >  1:1396620/1‑149 (MQ=255)
                       tcCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAATAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACt                                                                                                                              <  2:1742278/149‑1 (MQ=255)
                         cAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgt                                                                                                                            >  2:1946185/1‑149 (MQ=255)
                         cAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAAGATTAATCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgt                                                                                                                            >  1:2845105/1‑149 (MQ=255)
                          aaaaaCCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgtg                                                                                                                           <  2:2195512/149‑1 (MQ=255)
                               ccaccTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAgtg                                                                                                                      <  1:2271892/149‑1 (MQ=255)
                                 accTCATGCAATATAAACATCTATAAATAAAGATAACAACAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGtt                                                                                                                    <  2:2979644/149‑1 (MQ=255)
                                  ccTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTg                                                                                                                   >  2:1126840/1‑149 (MQ=255)
                                  ccTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTg                                                                                                                   <  2:3009426/149‑1 (MQ=255)
                                      aTGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAg                                                                                                               <  1:1168825/149‑1 (MQ=255)
                                       tGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGt                                                                                                              >  1:642125/1‑149 (MQ=255)
                                       tGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGt                                                                                                              >  1:2254868/1‑149 (MQ=255)
                                          aaTATAAACATTCATAAACAAAGACAACCATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaa                                                                                                           <  1:688242/149‑1 (MQ=255)
                                          aaTATAAACATCTATAAATAAAGATAACAATAGAATATTAAG‑CATCGTGTAATTGTGCACAGGGC‑GGGCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaa                                                                                                           >  1:2977464/1‑149 (MQ=255)
                                                aaCATCTATAAATAAAGATAACAATGGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGt                                                                                                     >  1:1523833/1‑149 (MQ=255)
                                                  cATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGttt                                                                                                   <  2:1853978/149‑1 (MQ=255)
                                                      tataAATAAAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaa                                                                                               <  1:2116493/149‑1 (MQ=255)
                                                      tataAATAAAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaa                                                                                               >  1:1931343/1‑149 (MQ=255)
                                                       ataaataaAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAACCTCGTTTacaaa                                                                                              >  2:1459473/1‑149 (MQ=255)
                                                       ataaataaAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaa                                                                                              >  1:1607532/1‑149 (MQ=255)
                                                       ataaataaAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTG‑TGTCCGCGATGCGTTCCTCTAGGAGTCAAAATGGCCACAAATGTTTCAGCGTTTGGGGGAAAACTGTGCAGTGTTGGCGGTCAAACTCGTTTaaaaa                                                                                              >  2:172247/1‑149 (MQ=255)
                                                        taaataaaGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa                                                                                             <  2:1931343/149‑1 (MQ=255)
                                                        gaaataaaGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa                                                                                             >  2:1556638/2‑149 (MQ=255)
                                                         aataaaaGATAACAATAGAATATTAAGCCAACAAATAA‑ACTTAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaac                                                                                            <  2:2132993/145‑1 (MQ=255)
                                                          aataaaGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaaca                                                                                           >  1:2745044/1‑149 (MQ=255)
                                                           ataaaGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTGGTTTacaaaacaa                                                                                          >  1:1647256/1‑149 (MQ=255)
                                                            taaaGATAACAATAGAATATTAAGCCAACAAATTA‑AAT‑AAAAAGTTCTGTCCTCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCACACTCGCTTacaaaccaaa                                                                                         <  2:2887614/149‑1 (MQ=255)
                                                            taaaGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaaa                                                                                         <  1:2295455/149‑1 (MQ=255)
                                                            taaaGATAACAATAGAATATTAAGACCACAAATAA‑ACTGCAACAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaccaaa                                                                                         >  1:2688684/1‑149 (MQ=255)
                                                            taaaGATAACAATAGAATATTAAGACAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaaa                                                                                         >  1:1538494/1‑149 (MQ=255)
                                                               aGATAACAATAGAATATTAAGTCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAACCAAAgtg                                                                                      >  1:56201/1‑149 (MQ=255)
                                                               aGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtg                                                                                      >  2:2808559/1‑149 (MQ=255)
                                                                   aaCAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACa                                                                                  >  1:1231726/1‑149 (MQ=255)
                                                                       aTAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACACAACAAAGGTTACAGAAc                                                                              >  1:35736/1‑149 (MQ=255)
                                                                          gAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGAc                                                                           >  1:432204/1‑149 (MQ=255)
                                                                           aaTATTAAGCCAACAAATAA‑ACTGAGGAGGTT‑GGTACGCGATGCTCTCCTCTAGGAGGCAAAATGGCCCCAAATGTTTCGTCTTTTGGGGGGAAAGTGTGGAGTGTTGGCAGGGAAACTCGTTGACAAACCGAGGGGTACAGAACGAcg                                                                          >  2:27120/1‑148 (MQ=255)
                                                                           aaTATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAAGTCGTTTACAAAACAAAGTGTACGCCACGACt                                                                          >  1:2945440/1‑149 (MQ=255)
                                                                           aaTATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACt                                                                          <  1:1825285/149‑1 (MQ=255)
                                                                                  aGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATg                                                                   >  2:1029119/1‑149 (MQ=255)
                                                                                    ccAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATCTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTc                                                                 <  2:1091097/149‑1 (MQ=255)
                                                                                     caacaaATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAAGGACTGCCCATGTCg                                                                >  1:2644606/1‑149 (MQ=255)
                                                                                     caacaaATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGAGTGCCCATGTCg                                                                >  2:2668178/1‑149 (MQ=255)
                                                                                     caacaaATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCg                                                                <  2:1607532/149‑1 (MQ=255)
                                                                                      aacaaATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGa                                                               >  1:814193/1‑149 (MQ=255)
                                                                                        caaATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAAAGACTGCCCATGTCGCtt                                                             >  2:7542/1‑149 (MQ=255)
                                                                                          aaTAA‑CCTGAAAAAGTT‑TTTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTa                                                           <  1:1029707/149‑1 (MQ=255)
                                                                                           aTAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAg                                                          >  1:1714543/1‑149 (MQ=255)
                                                                                                aCTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAAt                                                      >  1:111655/1‑149 (MQ=255)
                                                                                                 cTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATa                                                     <  2:1538494/149‑1 (MQ=255)
                                                                                                    aaaaaGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTgg                                                                                                                  <  1:41066/85‑1 (MQ=255)
                                                                                                    aaaaaGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTgg                                                                                                                  >  2:41066/1‑85 (MQ=255)
                                                                                                    aaaaaGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAgct                                                  >  2:2793362/1‑147 (MQ=255)
                                                                                                    aaaaaGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGtt                                                  >  2:2522032/1‑149 (MQ=255)
                                                                                                     aaaaGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCACAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGttt                                                 >  2:2350885/1‑149 (MQ=255)
                                                                                                      aaaGTT‑TGTCCGCGATGCTTTCATCTATGAGAAAAAATGGAACTAAAAGTTTCATCTTTTTGTATAAAACTCAACGTTATTTGCATTCATACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGtttt                                                <  2:2977464/149‑1 (MQ=255)
                                                                                                        aGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGtttttt                                              <  1:1773677/149‑1 (MQ=255)
                                                                                                             tGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaa                                          <  1:2808559/149‑1 (MQ=255)
                                                                                                             tGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaa                                          <  2:2213212/149‑1 (MQ=255)
                                                                                                             tGTCCGCGATGCTTTCCTCTATGAGTCAAAAGGGCCCCAAATGTTTCATCGTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaa                                          <  2:2251488/149‑1 (MQ=255)
                                                                                                               tCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaagg                                        >  2:110131/1‑149 (MQ=255)
                                                                                                                ccGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaagga                                       <  2:653210/149‑1 (MQ=255)
                                                                                                                ccGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTCTACAGAACGACTGTCCATGTCGATTTAGAAATAGTTTTTTgaaagga                                       <  1:1955142/149‑1 (MQ=255)
                                                                                                                  gcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaaggaaa                                     <  1:935671/149‑1 (MQ=255)
                                                                                                                    gATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGGCCCTGTCGATTTAGAAATAGTTTTTTGACAGGAAagc                                   >  1:2558642/1‑149 (MQ=255)
                                                                                                                     aTGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGCTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAagca                                  <  2:2248821/149‑1 (MQ=255)
                                                                                                                        cTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAATACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTACCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAgcagca                               <  2:2010434/149‑1 (MQ=255)
                                                                                                                        cTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAgcagca                               <  2:977571/149‑1 (MQ=255)
                                                                                                                           tCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGa                            >  2:775010/1‑149 (MQ=255)
                                                                                                                             ctctATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGaaa                          <  1:444543/149‑1 (MQ=255)
                                                                                                                              tctATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGaaaa                         >  1:1251514/1‑149 (MQ=255)
                                                                                                                                tATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAAtt                       <  2:961107/149‑1 (MQ=255)
                                                                                                                                tATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAAtt                       >  1:543590/1‑149 (MQ=255)
                                                                                                                                  tGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAGCTCGTTTACAAAACAAAGTGTACAGAACGACTACCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTaa                     <  2:513961/149‑1 (MQ=255)
                                                                                                                                  tGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTaa                     >  2:126577/1‑149 (MQ=255)
                                                                                                                                     gacagtttGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAAc                  >  1:4520/8‑149 (MQ=255)
                                                                                                                                      tCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTaaa                    >  2:1762852/1‑146 (MQ=255)
                                                                                                                                        aaaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAActct               <  2:970755/149‑1 (MQ=255)
                                                                                                                                        aaaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAActct               >  1:202544/1‑149 (MQ=255)
                                                                                                                                        aaaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAActct               >  2:440779/1‑149 (MQ=255)
                                                                                                                                        aaaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAActct               <  1:1039820/149‑1 (MQ=255)
                                                                                                                                          aaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGCAAATTAAAACTCTgg             >  2:2338151/1‑149 (MQ=255)
                                                                                                                                              gCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCCGTGTTGGCAGTCCAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGCAAGGCGATTGAAAATTAAAACTCTGGCAAt         >  2:1379928/1‑149 (MQ=255)
                                                                                                                                                cccAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTAAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCg       >  1:670851/1‑149 (MQ=255)
                                                                                                                                                 ccAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCgt      >  2:2008629/1‑149 (MQ=255)
                                                                                                                                                 ccAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCgt      >  2:2593419/1‑149 (MQ=255)
                                                                                                                                                     aTGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCgttgtt  <  1:2593419/149‑1 (MQ=255)
                                                                                                                                                     aTGGTTCATCATTTGGGGGAAAACTAGGCAGTGGTGGCAGTCAAACGCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCgttgtt  <  1:1720714/149‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
GACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAA‑ACTGAAAAAGTT‑TGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTT  >  NC_000913/4542850‑4543145

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.