New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4542691139 (0.770)20 (0.120) 18/274 16.6 12.6% intergenic (+57/‑425) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 = 4542987 146 (0.860)intergenic (+353/‑129) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 142 total aligned reads displayed.

CGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACG  >  NC_000913/4542545‑4542837
                                                                                                                                                  |                                                                                                                                                   
cgatataCCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaaa                                                                                                                                                   <  1:241273/146‑1 (MQ=255)
 gTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTGTGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGCTGGATTTAACTTATTGATAATAAAGTTAAACAAACAAACAAATAAAAAACAACATAGGCCAAAc                                                                                                                                                  >  1:1385107/1‑149 (MQ=255)
 gTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAACCAAATAAATACAAGCCAAGTGGGGCCattt                                                                                                                                                  >  1:2355726/1‑146 (MQ=255)
   tataCCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGTGCCAAACTg                                                                                                                                                >  2:2310186/1‑149 (MQ=255)
    ataCCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGTCAACCTGt                                                                                                                                               >  1:1662736/1‑149 (MQ=255)
    ataCCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt                                                                                                                                               >  1:2859366/1‑149 (MQ=255)
     aaCCGCCAGTAATGCTTCTCGTTTAGCCGGATTATGGGAAAGAGATACTGTCATAAACCAATAATCAAAAAGAAAAGAGGTTTGATTTAACTTATTGATAATAAAAAAAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTc                                                                                                                                              <  2:1477992/148‑1 (MQ=255)
      aCCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc                                                                                                                                             >  1:1122829/1‑149 (MQ=255)
       ccGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCa                                                                                                                                            <  1:884758/149‑1 (MQ=255)
       ccGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGAGTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGTGCCaaaatcaccc                                                                                                                                            >  2:2254082/1‑142 (MQ=255)
       acgcacgTAAGGCCGGTCGGTTTGCGTGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAAGAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCa                                                                                                                                            <  2:1378092/143‑1 (MQ=255)
        cGCCAGTAATGCTGCTCGTTTTTTTTTTTTTTTGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGTCCAAACTGTccct                                                                                                                                           >  2:1562139/1‑147 (MQ=255)
        cGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGACAACTTCTTATAATAATAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCat                                                                                                                                           >  1:2830731/1‑149 (MQ=255)
        cGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCAat                                                                                                                                           >  2:2041761/1‑149 (MQ=255)
           cAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATc                                                                                                                                        <  1:2916849/149‑1 (MQ=255)
           cAGTAATGCAGCTCGGTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTGGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATc                                                                                                                                        <  1:1357541/149‑1 (MQ=255)
            aGTAATTCTGCTCTTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCa                                                                                                                                       <  2:432507/149‑1 (MQ=255)
                aTGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaa                                                                                                                                   <  1:587800/149‑1 (MQ=255)
                  gctgctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAACAACAAATAAATACAAGACAATTGGGGCCAAACTATCCATATCataaata                                                                                                                                 >  2:830750/1‑149 (MQ=255)
                  gctgctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaata                                                                                                                                 <  1:1018592/149‑1 (MQ=255)
                    tgctCGTTTTGCCGGATAATGGGAAAGAAATAATCTCATAATACAAGAAGTAAAAAGAGCAAAGTTGAGAGTTAACTTATTTATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAg                                                                                                                               >  2:2141232/1‑149 (MQ=255)
                    gtctCGTTTTGCCGGATTATGTGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAg                                                                                                                               <  2:2729479/147‑1 (MQ=255)
                       tCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACATGTGAATCTGGGCCAAACTGTCCATATCATAAATAAGTTa                                                                                                                            <  1:734656/149‑1 (MQ=255)
                        cGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAACCACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTAc                                                                                                                           >  1:1600399/1‑149 (MQ=255)
                          ttttGCCGGATTATGGGAAAGAAATAATCTCGTAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGt                                                                                                                         >  2:1409471/1‑149 (MQ=255)
                          gtttGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGt                                                                                                                         <  2:992395/148‑1 (MQ=255)
                               ccGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt                                                                                                                    >  2:2377595/1‑149 (MQ=255)
                                 ggATTATGGGAAAGAAATAATCTCATAACCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTCATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAGATGTCCACATCATCAATAAGTCACATAtttttt                                                                                                                  >  2:1704295/1‑149 (MQ=255)
                                      aTGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCaa                                                                                                             <  2:2859366/149‑1 (MQ=255)
                                         gcaaagaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTAAGCATAGCATAAATAAGTTACGTATTTTTTCTCAAGCa                                                                                                          <  2:2152599/147‑1 (MQ=255)
                                          gaaagaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGACAAACTATCCATATCATAAATAAGATACGTATTTTTTCTCAAGCAt                                                                                                         >  2:1242942/1‑149 (MQ=255)
                                           aaagaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGCTTGAATTAACTTATTGATAGTAGAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATa                                                                                                        >  1:2979644/1‑149 (MQ=255)
                                            aagaaaTAATCACATTAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATCATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGCCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaa                                                                                                       <  1:1027444/149‑1 (MQ=255)
                                             agaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa                                                                                                      <  1:2617562/149‑1 (MQ=255)
                                               aaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa                                                                                                    <  2:2795075/149‑1 (MQ=255)
                                                 ataatCTCATAAACGAAAATTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAata                                                                                                  <  1:537371/149‑1 (MQ=255)
                                                    atCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTa                                                                                               <  1:2546541/149‑1 (MQ=255)
                                                     tctcATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTAAAACATAAAAATAGTaa                                                                                              >  1:2041089/1‑149 (MQ=255)
                                                      ctcATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaa                                                                                             <  2:2982107/149‑1 (MQ=255)
                                                       tcATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaa                                                                                            >  1:1828726/1‑149 (MQ=255)
                                                          taaaaaaaaaaCCAAAAAGAGAAGAGGGTCGATTTAACTTATTGATAAGAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAc                                                                                         <  2:2088246/143‑1 (MQ=255)
                                                           aaaCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACg                                                                                        >  2:1467909/1‑149 (MQ=255)
                                                            aaCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGa                                                                                       <  1:2310186/149‑1 (MQ=255)
                                                            aaCGAAAAATAAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGTGGTCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGa                                                                                       <  2:686472/149‑1 (MQ=255)
                                                             aCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACgcc                                                                                      >  1:1302849/1‑147 (MQ=255)
                                                               gAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑Caa                                                                                   >  2:1099675/1‑149 (MQ=255)
                                                               gAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑Caa                                                                                   >  1:1557579/1‑149 (MQ=255)
                                                               gAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAACATACAAATATTAAAAAACGA‑Caa                                                                                   >  1:2738253/1‑149 (MQ=255)
                                                                aaaaaTTAAAAAGAGAAGAGGTTTGATTTAACTTATGGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCCTAAATAAGTTCCGTATAACTTTGAAAGTATAGAAATATTAAAAAACGA‑Caaa                                                                                  >  1:2658514/1‑149 (MQ=255)
                                                                   aaTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAg                                                                               >  2:2297548/1‑149 (MQ=255)
                                                                        aaaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTACATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCt                                                                          <  1:1637089/149‑1 (MQ=255)
                                                                              gaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGt                                                                    <  1:1409471/149‑1 (MQ=255)
                                                                              gaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGt                                                                    <  1:1687271/149‑1 (MQ=255)
                                                                                 gagGTTTGATTTAACTTATTAATAATAAAGTTAAAAAAACAAATAAATACAAGAAAATTGGGGCTAAACTGTCCATATCATAAATAAGTTACGTGTTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑AAAAAAGCATCTAACTGTTTg                                                                 >  2:248561/1‑149 (MQ=255)
                                                                                   ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGat                                                               <  2:2665044/149‑1 (MQ=255)
                                                                                    gTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATTTTAAAAAACGA‑CAAAAAGCATCTAAATGTTTGata                                                              >  2:1339141/1‑149 (MQ=255)
                                                                                    gTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAACAAGCATCTAACTGTTTGata                                                              >  2:1181763/1‑149 (MQ=255)
                                                                                    gTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGata                                                              >  2:1338853/1‑149 (MQ=255)
                                                                                     tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGatat                                                             <  1:1359029/149‑1 (MQ=255)
                                                                                       tGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGt                                                           <  2:475615/149‑1 (MQ=255)
                                                                                       tGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAAATGTCCCTATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTCAAAAAAAA‑CAAAAAGCATCTAAATGTTTAatatat                                                           >  1:2522050/1‑147 (MQ=255)
                                                                                          tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTACATATCATAAATAAATTACGTATTTTTTCTTAAGCATAAAAATATTAAAAAACGA‑CAAAAAGATTCTAACTGTTTAatatattat                                                        >  2:757790/1‑144 (MQ=255)
                                                                                           taaaCTTATTAATAATAAAGTAAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTAAat                                                       <  2:1059927/147‑1 (MQ=255)
                                                                                            tAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTTGCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTAAatt                                                      >  1:2085881/1‑149 (MQ=255)
                                                                                              aCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAACATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTAAattat                                                    >  2:1014584/1‑149 (MQ=255)
                                                                                               cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTaaa                                                        <  1:2705176/144‑1 (MQ=255)
                                                                                                    tGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTAt                                              <  1:179351/149‑1 (MQ=255)
                                                                                                    tGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTAt                                              <  1:1467909/149‑1 (MQ=255)
                                                                                                        aataaAGTTAAAAAAACAAATAAATACAAAACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACAA‑CAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTa                                          <  2:240409/149‑1 (MQ=255)
                                                                                                          taaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTaaa                                        >  1:3009426/1‑149 (MQ=255)
                                                                                                           aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaat                                       >  1:1499055/1‑149 (MQ=255)
                                                                                                               ttAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATGAATAAGTTACGTATTTTGTCTCAAGCATAAAAATATTAAGAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaattaat                                   >  2:2271892/1‑149 (MQ=255)
                                                                                                                 aaaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAAttt                                 >  1:2157975/1‑149 (MQ=255)
                                                                                                                 aaaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAAttt                                 <  1:2917774/149‑1 (MQ=255)
                                                                                                                  aaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTc                                >  2:3002705/1‑149 (MQ=255)
                                                                                                                   aaaaaCAAATAAATACTAGACAATTGGGGCCAAACTGTCCATATCATAAATACGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTca                               <  2:769637/149‑1 (MQ=255)
                                                                                                                   aaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCTTAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTca                               <  2:875794/149‑1 (MQ=255)
                                                                                                                   aaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGCTAAAGTGCTTTATTCTATTAATGAAAAAAAACGACCAAGAAGC‑TCTAACGATGTCATATGTAAATTATTTCTATCTTAAATTAATATca                               >  1:2219869/1‑149 (MQ=255)
                                                                                                                    aaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTcac                              <  1:2185809/149‑1 (MQ=255)
                                                                                                                     aaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTTTTTGATATTTAAATTATGCCTATTGTAAATTAATTTcaca                             >  1:2887614/1‑149 (MQ=255)
                                                                                                                     aaaCAAATAAATAAAAGACAATTGGGGCCAAACTGTCCATATCATAAATCAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTCAATTAATTTcaca                             >  1:2167837/1‑149 (MQ=255)
                                                                                                                      aaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACAt                            <  2:1557579/149‑1 (MQ=255)
                                                                                                                       aCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATc                           <  1:2453231/149‑1 (MQ=255)
                                                                                                                         aaataaatACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCAc                         >  2:687106/1‑149 (MQ=255)
                                                                                                                                 aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCta                 >  2:1796730/1‑149 (MQ=255)
                                                                                                                                 aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCAATTGTAAATCAATTTCACATCACCACCGCta                 >  1:1872663/1‑149 (MQ=255)
                                                                                                                                   aaGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCtata               >  2:2222159/1‑149 (MQ=255)
                                                                                                                                     gACAATTGGGGACAATCTGCCAATCTACTAACTAAGTACAGTACTTTTTAAAAAGTATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATg             <  1:2888134/149‑1 (MQ=255)
                                                                                                                                       catgtGGTGCTAAACGGTTCATAACATAAATAAGTTACGTAATTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAACAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTa           <  2:1018919/145‑1 (MQ=255)
                                                                                                                                          ttGGGTACAAACTGTCCATACCATAAATAAGTTACGTATTTTCTCCCAACCCTAAAAATATTAAAAAACGA‑CGATAAGCATCTCACTGTTTGGTATGTACATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAg        <  2:1983897/149‑1 (MQ=255)
                                                                                                                                          ttGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAg        <  2:992495/149‑1 (MQ=255)
                                                                                                                                          ttGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAACCATAAAAATATTAAAAAACGA‑CAAAGAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAg        <  2:1983529/149‑1 (MQ=255)
                                                                                                                                          ttGGGGCCAAACTGTCCATATCATAAATAAGTCACGTATTTTTTCTCAAGCATATAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATAGGTAAATTATTTCTATTGTAAATTCATTTCACATCACCTCCGCTATATGTAAAg        <  2:1670361/149‑1 (MQ=255)
                                                                                                                                          gtGGGGCCAAACTGTCCATATCATACATAAGTTACGTTTTTCTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTCGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAg        <  2:1915201/148‑1 (MQ=255)
                                                                                                                                             gggCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTa     >  1:1091097/1‑149 (MQ=255)
                                                                                                                                              ggCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTaa    <  2:2627638/149‑1 (MQ=255)
                                                                                                                                              ggCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTaa    <  1:2997059/149‑1 (MQ=255)
                                                                                                                                              ggCCAAACTGTCCATATCATAAATAAGTCACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTTACTGTTTGATATGTAAATTATTTCTATTTTACATTAATTTCACATCACCTCCGCTATATGTAAAGCTaa    <  2:794700/149‑1 (MQ=255)
                                                                                                                                               gCCAAACAGTTCATATTAGAAATAAGTTAAGTATTGTTTCTTAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCCAACTGTTTATTATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAAc   <  1:1022842/149‑1 (MQ=255)
                                                                                                                                                ccAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACg  >  1:2195512/1‑149 (MQ=255)
                                                                                                                                                  |                                                                                                                                                   
CGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA‑CAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACG  >  NC_000913/4542545‑4542837

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.