| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,726,004 | G→A | intergenic (‑84/‑19) | ydhL ← / → nemR | DUF1289 family protein/transcriptional repressor for the nemRA‑gloA operon, quinone‑, glyoxal‑, and HOCl‑activated |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,726,004 | 0 | G | A | 94.1% | 135.5 / NA | 51 | intergenic (‑84/‑19) | ydhL/nemR | DUF1289 family protein/transcriptional repressor for the nemRA‑gloA operon, quinone‑, glyoxal‑, and HOCl‑activated |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (29/19); minor base C (2/1); total (31/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGGCAAATTCCCCGGCACGGGCTCTGGACGGGAAAGAACTCTAATTGCTCCGCCACTTCGCCCTCCTCAGATAAGATTATTACCATTATTGAAGCTGTTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACCGACTGGTCTACTACACTCCAACGCATGAACAAACACACCGAACATGATACTCGCGAACATCTCCTGGCGACGGGCGAGCAACTTTGCCTGCAACGTGGATTCACCGGGATGGGGCTAAGCGAATTACTAAAAACCGCTGAAG > NC_000913/1725865‑1726140 | tGGCAAATTCCCCGGCACGGGCTCTGGACGGGAAAGAACTCTAATTGCTCCGCCACTTCGCCCTCCTCAGATAAGATTATTACCATTATTGAAGCTGTTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACTGACTGATct > 1:1096342/1‑143 (MQ=255)tGGCAAATTCCCCGGCACGGGCTCTGGACGGGAAAGAACTCTAATTGCTCCGCCACTTCGCCCTCCTCAGATAAGATTATTACCATTATTGAAGCTGTTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACCGACTGATct > 2:33125/1‑143 (MQ=255) gCAAATTCCCCGGTACGGGCTCTGGACGGGAAAGAACTCTAATTGCTCCGCCACTTCGCCCTCCTCAGATAAGATTATTACCATTATTGAAGCTGTTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACCGACTGATctac < 1:113760/143‑1 (MQ=255) gCAAATTCCCCGGCACGGGCTCTGGACGGGAAAGAACTCTAATTGCTCCGCCACTTCGCCCTCCTCAGATAAGATTATTACCATTATTGAAGCTGTTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACCGACTGATctac < 1:1028460/143‑1 (MQ=255) ttCCCCGGCACGGGCTCTGGACGGGAAAGAACTCTAATTGCTCCGCCACTTCGCCCTCCTCAGATAAGATTATTACCATTATTGAAGCTGTTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACCGACTGCactacttaac > 1:311127/1‑139 (MQ=255) ccccGGCACGGGCTCTGGACGGGAAAGAACTCTAATTGCTCCGCCACTTCGCCCTCCTCAGATAAGATTATTACCATTATTGAAGCTGTTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACCGACTGATCTACTACACTc > 1:938455/1‑143 (MQ=255) ccGGCACGGGCTCTGGACGGGAAAGAACTCTAATTGCTCCGCCACTTCGCCCTCCTCAGATAAGATTATTACCATTATTGAAGCTGTTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACCGACTGATCTACTACACTCCa > 2:368972/1‑143 (MQ=255) ccGGCACGGGCTCTGGACGGGAAAGAACTCTAAAAGCTCCGCGACTCCGCCCTCCTCAGATAAGATTATTACCATTATTGAAGCTCTTAATGTCCCAAGTAGCAACCTTGCTTCCCCTCGCCCGACTGCTCTACTCCCCTCCa > 2:531654/1‑143 (MQ=255) aCGGGCTCTGGACGGGAAAGAACTCTAATTGCTCCGCCACTTCGCCCTCCTCAGATAAGATTATTACCATTATTGAAGCTGTTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACCGACTGATCTACTACACTCCAACGCa < 1:193499/143‑1 (MQ=255) aCGGGCTCTGGACGGGAAAGAACTCTAATTGCTCCGCCACTTCGCCCTCCTCAGATAAGATTATTACCATTATTGAAGCTGTTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACAGACTGATCTACTACACTCCAACGCa > 1:407864/1‑143 (MQ=255) aCGGGCTCTGGACGGGAAAGAACTCTAATTGCTCCGCCACTTCGCCCTCCTCAGATAAGATTATTACCATTATTGAAGCTGGTAATGTCCACAGCCGCAACTGTGCTTGCACTAGACCGACTGATCTACTACACTCCAACGCa < 1:813499/143‑1 (MQ=255) ggACGGGAAAGAACTCTAATTGCCCCGCCACTTCGCCCTCCTCAGATAAGATTATTACCATTATTGAAGCTGTTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACCGACTGATCTACTACACTCCAACGCATGaacaaac < 1:666936/143‑1 (MQ=255) cGGGAAAGAACTCTAATTGCTCCGCCACTTCGCCCTCCTCAGATAAGATTATTACCATTATTGAAGCTGTTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACCGACGGATCTACTACACTCCAACGCATGAACAAacaca > 1:320926/1‑143 (MQ=255) ggAACGACCTCTAATTCCTCCGGCACTTCGCCCTCTTCAGATAAGATTATTACCATTATTGAAGCTGTTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACCGACTGATCTACTACTTTCCAACGCATGACCAAACACAcc < 2:546393/143‑1 (MQ=255) aCTCTAATTGCTCCGCCACTTCGCCCTCCTCAGATAAGATTATTACCATTATTGAAGCTGTTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACCGACTGATCTACTACACTCCAACGCATGAACAAACACACCAAACATg > 2:48129/1‑143 (MQ=255) ctctAATTGCTCCGCCACTTCGCCCTCCTCTGTTTTGATTATTACCATTATTGAAGCTGTTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACCGACTGATCTACTACACTCCAACGCATGAACAAACACACCGAACATGa < 1:494154/143‑1 (MQ=255) tctAATTGCTCCGCCACTTCGCCCTCCTCAGATAAGATTATTACCATTATTGCAGCTGTTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACCGACTAATATACAACACACCAACGCATGAACAAACACACCGAACATGAt > 1:122712/1‑143 (MQ=255) tctAATTGCTCCGCCACTTCGCCCTCCTCAGATAAGATTATTACCATTATTGAAGCTGTTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACCGACTGATCTACTACACTCCAACGCATGCACAAACACACCGAACATGAt > 1:535769/1‑143 (MQ=255) tCCGCCACTTCGCCCTCCTCAGATAAGATTATTACCATTATTGAAGCTGTTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACCGACTGATCTACTACACTCCAACGCATGAACAAACACACCGAACATGATACTCGCGaa > 1:899364/1‑143 (MQ=255) ccGCCACTTCGCCCTCCTCAGATAAGATTATTACCATTATTGAAGCTGTTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACCGACTGATCTACTACACTCCAACGCATGAACAAACACACCGAACATGATACTCGCGAAc > 1:62811/1‑143 (MQ=255) cGCCACTTCGCCCTCCTCAGATAAGATTATTACCATTATTGAAGCTGTTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACCGACTGATCTACTACACACCAACGCATGCACCAACACACCGAACATCATCATCGCGAACa > 2:558646/1‑143 (MQ=255) aCTTCGCCCTCCTCAGATAAGATTATTACCATTATTGAAGCTGTTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACCGACTGATCTACTACACTCCAACGCATGAACAAACACACCGAACATGATACTCGCGAACAtctc > 1:867644/1‑143 (MQ=255) tcAGATAAGATTATTACCATTATTGAAGCTGTTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACCGACTGATCTACTACACTCCAACGCATGAACAAACACACCGAACATGATGCTCGCGAACATTCCCCAGCGACGGGc > 2:922010/1‑143 (MQ=255) cAGATAAGATTATTACCATTATTGAAGCTGTTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGCCCGACTGATCTACTACACTCCAACGCATGAACAAACACACCGAACATGATACTCGCGAACATCTCCTGGCGACGGGCg < 2:954885/143‑1 (MQ=255) cAGATAAGATTATTACCATTATTGAAGCTGTTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACCGACTGATCTACTACACTCCAACGCATGAACAAACACACCGAACATGATACTCGCGAACATCTCCTGGCGACGGGCg > 1:620950/1‑143 (MQ=255) aGATAACCTTACTCCCCTTCTCGAAGCTGTTAATCTCCTAAGTAGCAACTTTCCTTGCACTAGACCGACTGATCTACTACACTCCAACGCATGAACAAACCCACCGAACATGATACTCGCGAACATCTCCTGGCGACGGGCGa < 1:665016/143‑1 (MQ=255) aTAAGATTATTACCATTATTGAAGCTGTTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACCGACTGATCTACTACACTCCAACGCATGAACAAACACACCGAACATGATACTCGCGAACATCTCCTGGCGGCGGGCGAGc > 1:236153/1‑143 (MQ=255) attattACCATTATTGAAGCTGTTAATGTCAAAAGTAGCAACTTTGCTTGCACTAGACAGAGTGATCTACTAAAATACAACGCATGAACAAAAACAACCAACATGATAACCGCAACCATACCCACGCGAAGGGCGAACaaaaa > 2:994102/1‑140 (MQ=255) attaCCCTTATTGAATCCATTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACCGACTGATCTACTACACTCCAACGCATGAACAAACACACCGAACATGATACTCGCGAACATCTCCTGGCGACGGGCGAGCAACTTTGc < 2:407864/143‑1 (MQ=255) attGAAGCTGTTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACCGACTGATCTACTACACTCCAACGCATGAACAAACACACCGAACATGATACTCGCGAACATCTCCTGGCGACGGGCGAGCAACTTTGCCTGCAACGt < 1:64400/143‑1 (MQ=255) attGAAGCTGTTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACCGACTGATCTACTACACTCCAACGCATGAACAAACACACCGAACATGATACTCGCGAACATCTCCTGGCGACGGGCGAGCAACTTTGCCTGCAACGt < 1:5433/143‑1 (MQ=255) aaGCTGCTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACCGCCTCATCTACTACACTCTAACGCATGAACAAAGACACCGAACGTGATCCTCGCGAACATATCCTACCCACGGCCGAGCCACATTGCCtctcacatggac > 2:623712/1‑132 (MQ=255) ttAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACCGACTGATCTACTACACTCCAACGCATGAACAAACACACCGAACATGATACTCGCGAACATGTCCTGGCGACGGGCGAGCAACTTTGCCTGCAACCTGGATTCACCg > 2:615757/1‑143 (MQ=255) tAATGTCCAAGGTAGCACCTTTGCTTGCACTAGACCGACTGATCTACTACACTCCAACGCATGAACAAACACACCGAACATGATACTCGCGAACATCTCCTGGCGACGGGCGAGCAACTTTGCCTGCAACGTGGATTCACCgg < 2:306952/143‑1 (MQ=255) tAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACCGACTGATCTACTACACTCCAACGCATGAACAAACACACCGAACATGATACTCGCGAACATCTCCTGGCGACGGGCGAGCAACTTTGCCTGCAACGTGGATTCACCgg < 2:310529/143‑1 (MQ=255) gTCCAAAGTAGCAACTTTGCTTGCACTAGACCGACTGATCTACTACACTCCAACGCATGAACAAACACACCGAACATGATACTCGCGAACATCTCCTGGCGACGGGCGAGCAACTTTGCCTGCAACGTGGATTCACCGGGATg < 1:368972/143‑1 (MQ=255) tCCAAAGTAGCAACTTTGCTTGCACTAGACCGACTGATCTACTACACTCCAACGCATGAACAAACACACCGAACATAATACTCGCGAACATCTCCTGGCGACGGGCGAGCAACTTTGCCTGCAACGTGGATTCACCGGGATgg > 1:749683/1‑143 (MQ=255) cAAAGTAGCAACTTTGCTTGCACTAGACCGACTGATATACTCCACTCCAACGCATGACCAAACACACCGAACATGATACTCGCGAACATCTCCTGGCGACGGGCGAGCAACTTTGCCTCCAAAGTGGATTCACCGGGATgggg > 1:767381/1‑143 (MQ=255) aacgTAGCAACTTTGCTTGCACTAGACCGACTGATCTACTACACTCCAACGCATGAACAAACACACCGAACATGATACTCGCGAACATCTCCTGGCGACGGGCGAGCAACTTTGCCTGCAACGTGGATTCACCGGGATGGGGc < 1:992705/140‑1 (MQ=255) tAGCAACTTTGCTTGCACTAGACCTACTGATCTACTACACTCCAACGCATGAACAAACACACCGAACATGATACGCGCGAACATCTCCTGGCGACGGGCGAGCAACTTTGCCTGCAACGTGGATTCACCGGGATGGGGCTAAg < 2:1111808/143‑1 (MQ=255) cAACTTTGCTTGCACTAGACCGACTGATCTACTACACTCCAACGCATGAACAAACACACCGAACATGATACTCGCGAACATCTCCTGGCGACGGGCGAGCAACTTTGCCTGCAACGTGGATTCACCGGGATGGGGCTAAGCGa > 1:723267/1‑143 (MQ=255) aCTTTGCTTGCACTAGACCGACTGATCGACTACACTCCAACGCATGCACAAACACACCGAACATGATACTCGCGGACATCTCCTGGCCACAGCCGCGCCGGTTGGCCTGGAACGTGGATTCACCGGGAGGCGGCCAAGCgcac > 2:245272/1‑140 (MQ=255) tttGCTTGCACTAGACCGACTGATCTACTACACTCCAACGCATGAACAAACACACCGAACATGATACTCGCGAACATCTCCTGGCGACGGGCGAGCAACTTTGCCTGCAACGTGGATTCACCGGGATGGGGCTAAGCGCATTa > 1:244567/1‑143 (MQ=255) tttGCTTGCACTAGACCGACTGATCTACTACACTCCAACGCATGAACAAACACACCGAACATGATACTCGCGAACATCTCCTGGCGACGGGCGAGCAACTTTGCCTGCAACGTGGATTCACCGGGATGGGGCTAAGCGAATTa > 1:1134532/1‑143 (MQ=255) tttGCTTGCACTAGACCGACTGATCTACTACACTCCAACGCATGAACAAACACACCGAACATGATACTCGCGAACATCTCCTGGCGACGGGCGAGCAACTTTGCCTGCAACGTGGATTCACCGGGATGGGGCTAAGCGAATTa > 1:936109/1‑143 (MQ=255) ttgctggcAGCAGACCGACTGATCTACTACACTCCAACGCATGAACAAACACACCGAACATGATACTCGCGAACATCTCCTGGCGACGGGCGAGCAACTTTGCCTGCAACGTGGATTCACCGGGATGGGGCTAAGCGAATTAc < 1:938898/143‑1 (MQ=255) ttgcACTAGACCGACTGATCTACTACACTCCAACGCATGAACAAACACACCGAACATGATACTCGCGAACATCTCCTGGCGACGGGCGAGCCACTTTGCCTGCAACGTGGATTCACCGGGATAGGGCTAAGCGACTTACTaaa > 1:143192/1‑143 (MQ=255) ttgcACTAGACCGACTGATCTACTACACTCCAACGCATGAACAAACACACCGAACATGATACTCGCGAACATCTCCTGGCGACGGGCGAGCAACTTTGCCTGCAACGTGGATTCACCGGGATGGGGCTAAGCGAATTACTaaa > 1:593965/1‑143 (MQ=255) aGACCGACTCAGCTTCTACGCGCCAACGCATGAACAAACACACCGAACATGATACGCGCGAACATCTCCTGGCGACGGGCGAGCAACTTTGCCTGCAACGTGGATTCACCGGGATGGGGCTAAGCGAATTACTAAAAACCGCt < 2:100285/143‑1 (MQ=255) gACCGACTGCTCTACTACACTCCAACGCACGAACCAACACACCGAACAGGTTACTCGCGAACGTCTCCGGGCGACGGGCGAGCAACTTTGCATGCAACGTAGATTCACCGGGATGGAGCTAAGCGAATTACTAAAATCCGCTg < 2:436381/143‑1 (MQ=255) cGACTGATCTACTACACTCCAACGCATGAACAAACACACCGAACATGATACTCGCGAACATCTCCTGGCGACGGGCGAGCAACTTTGCCTGCAACGTGGATTCACCGGGATGGGGCTAAGCGAATTACTAAAAACCGCTGAAg > 1:58960/1‑143 (MQ=255) | TGGCAAATTCCCCGGCACGGGCTCTGGACGGGAAAGAACTCTAATTGCTCCGCCACTTCGCCCTCCTCAGATAAGATTATTACCATTATTGAAGCTGTTAATGTCCAAAGTAGCAACTTTGCTTGCACTAGACCGACTGGTCTACTACACTCCAACGCATGAACAAACACACCGAACATGATACTCGCGAACATCTCCTGGCGACGGGCGAGCAACTTTGCCTGCAACGTGGATTCACCGGGATGGGGCTAAGCGAATTACTAAAAACCGCTGAAG > NC_000913/1725865‑1726140 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |