| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,909,311 | Δ774 bp | [pstA]–[pstC] | [pstA], [pstC] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3909311 | 3910084 | 774 | 62 [0] | [0] 62 | [pstA]–[pstC] | [pstA], [pstC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3909310 | 0 (0.000) | 56 (0.870) | 49/268 | 0.2 | 100% | coding (129/891 nt) | pstA | phosphate ABC transporter permease |
| ? | NC_000913 | 3910085 = | 0 (0.000) | coding (313/960 nt) | pstC | phosphate ABC transporter permease | |||||
ACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGAACAGGCCGAAGGCCATCGTCGCCATCGAGAGCGTCAGCGCAATACGGTTTTTGAGGCGGCGACGCGCCTGCATTTTGCGGCGAGATTCAGCCAGCGCCGCAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCT > NC_000913/3909174‑3909451 | ccaGGCCGCGACCCGCCGGCGCGTTCGCCAGACCGCCGCCGTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGGCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaa < 2:535385‑M1/142‑7 (MQ=255)aCAGCCCGCTACCCGCCAGAGCCTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATTCCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaa < 1:619210‑M1/143‑7 (MQ=255) aGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACCTACCGTCGATACCGCGAGTGATGGTGGACATTACAATCCAGATCAGCCAGgcgcaagc > 1:72506‑M1/1‑135 (MQ=255) cccGCTACCCGCCAGAGCGTTCGCCAGACCACCCCCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctc < 2:965955‑M1/143‑11 (MQ=255) cccGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTACTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctc > 2:1042648‑M1/1‑133 (MQ=255) tACCCGCCAGAGCGTTCGCCATACCACCACCTGCCGTATTGGGCGGCTGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtca < 2:131317‑M1/143‑16 (MQ=255) cGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaa < 1:1045702‑M1/143‑20 (MQ=255) cGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaa > 2:913357‑M1/1‑124 (MQ=255) gcaagggcgttcgCCAGACCACCACCTTCCGGATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGAGATGCCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaac < 2:196400‑M1/137‑21 (MQ=255) cGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACGGTCGATACCGCGAGTGATGGTGGACATTAAGATCCAGATCAGCCAGgcgcgagctcagtcaggagcagggcga > 1:474154‑M1/1‑116 (MQ=255) gCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccg < 2:898663‑M1/143‑33 (MQ=255) ccAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCTACATCCCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccga < 2:1027373‑M1/143‑34 (MQ=255) aGACCGCCGCCGCCCGGAGTGGGCGGCGCCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaa < 2:401286‑M1/143‑36 (MQ=255) gACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAACCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaac > 2:412771‑M1/1‑107 (MQ=255) accaccaccTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgctaccgaaaat > 1:59425‑M1/1‑106 (MQ=255) caccaccTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCATATCAGCCAGgagcaagctcagtcaggaacagggcgataccgaaactca > 1:1052711‑M1/1‑104 (MQ=255) accaccTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACAGTCGATTCCGCGAGTGAGGGTGGACATTAAAATCCAGATCAGCCAGacgcaagctcagtcaggaacagggcgataccgaaactcac > 1:1063936‑M1/1‑103 (MQ=255) ccaccTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcacc > 1:953137‑M1/1‑102 (MQ=255) caccTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccg > 1:365760‑M1/1‑101 (MQ=255) tCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGACAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcatgaaccgcgcgataccgacactcaccggggcg > 2:254328‑M1/1‑96 (MQ=255) tATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcga < 1:788295‑M1/143‑52 (MQ=255) ggcggcggcGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGCGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcccaagcccaggcaggaacagggcgataccgaacctcacccggacggcgagcacg > 2:458317‑M1/1‑87 (MQ=255) cggcgTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacagcggccagcagcgc > 1:1113453‑M1/1‑82 (MQ=255) ggcgTCATTTCAGTGATCAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcg < 1:1148792‑M1/143‑63 (MQ=255) ggcgTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcg > 1:1014228‑M1/1‑81 (MQ=255) accacagtgAACAGCGCCAGCGACATACCGGCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaac < 1:728025‑M1/139‑69 (MQ=255) tttCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctacgtcacgatcagggcgataccgaaacccaccgggccggcgatcagcagcgagagcaacg > 2:894440‑M1/1‑74 (MQ=255) tgagtGACCAGCGCCAGCTGCATACCGTCGATACCGCGAGTGATGGTGGAGATTAAAATCCAGATCAGCCAGgcgcaaggtcagtcaggaacagggcgataccgaagctcaccgggacggcgatcagcagcgcgataaacgaa < 2:1096868‑M1/141‑72 (MQ=255) gcggtcagcagcgccggCGACATCCCGTCGAGACCGCGAGTGAGGGTCGACATTAAATTCCAGATCAGCCAGgcgcaagctcagccaggaacatggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaa < 2:1132392‑M1/135‑72 (MQ=255) cgaACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaccagggccatcccggatctcaccgggacggcgatcagcagcgcgataaacgaagtca < 1:612623‑M1/142‑76 (MQ=255) aGCGCCAGCGACGTACCGTCGATACCGCGAGTGATGGTGGACATTAAAAGCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaac < 1:679095‑M1/143‑81 (MQ=255) aCCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgcagtcacgaacgtaccgtagcgcgg > 2:84436‑M1/1‑49 (MQ=255) aCCGCCGATACCGCGAGTGATGGTGGACATTAAAATCCAGCTCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcgg < 1:789890‑M1/143‑95 (MQ=255) aCCGCCGATACCGCGAGGGATGGGGGACATTAAAATCCAGAGCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcgg < 1:992089‑M1/143‑95 (MQ=255) ccGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggagaacagcagcgcgacaaacgaagtcaccaacgtaccgtagaccggc > 2:468181‑M1/1‑48 (MQ=255) gTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcac < 1:1042648‑M1/143‑98 (MQ=255) cGATACCGCGTGTTATGGGGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcacca < 2:1052711‑M1/143‑100 (MQ=255) gcgcgaGTGACGGTGGCCCTTAAACACCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgcc < 1:488571‑M1/142‑105 (MQ=255) ccGCGAGTGATGGTGGACATTAAAATCCAAATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactaaccgggacgacgatcagcagcgcgaaaaacgcagtcaccaacgtacggtagaccggcaccaacgcc > 2:212873‑M1/1‑39 (MQ=255) gcgAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgcccg > 1:158711‑M1/1‑37 (MQ=255) aGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgattagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgta < 1:510507‑M1/143‑110 (MQ=255) aGTGATGGTGGACATTAAAACCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgta < 1:412771‑M1/143‑110 (MQ=255) tGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtaga > 1:956421‑M1/1‑32 (MQ=255) gtggACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtgccgtagatcggcaccagcgccccgtagatatcg > 1:148184‑M1/1‑27 (MQ=255) gtggACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcg > 2:939356‑M1/1‑27 (MQ=255) gtggACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaaggcaccaacggaccgtagatcggcaccagcgccccggagatgtcg > 2:784617‑M1/1‑27 (MQ=255) ggtgagtctaaaatccaGATCAGCCACgcgcaagggcagtcaggaacagggcgatcccgaacctcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcg < 2:225799‑M1/135‑117 (MQ=255) ggACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcggcagcgcgataaacgaagtcaccaacgtaccgcagataggcaccagagccccgtagacagcgta > 2:92620‑M1/1‑25 (MQ=255) gACATTAAAATCCAGATCAACCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttc > 1:250987‑M1/1‑24 (MQ=255) aTTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgctcagcagcccgataaacgaagtcaccaacgtaccgtagcgaggcacccgcgccccgtagatatcgttcggt > 1:599835‑M1/1‑21 (MQ=255) aTTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggt > 1:398369‑M1/1‑21 (MQ=255) catgcccgtgcagccaggcgcaacctcagtcaggaacagggcgctaccgaaacgcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacggaccgtagatcggcaccagcgccccgtagatatcgttcggtgcat < 2:1014228‑M1/133‑127 (MQ=255) agcccagggcagcgaggcgcagtctgattgaggaacaggccgatacggaaactcaccgggacggcgagcagcagcgggataaacgaagtcaccaccgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgcatc < 2:416429‑M1/134‑128 (MQ=255) gtcCAGATCAGCAAGgcgcaagctcaggcaggaacagggcgataccgaaacgcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgcatcc < 1:982752‑M1/142‑129 (MQ=255) ccAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactccccgggccagcaaatagcagcgcgataaccgaagtcaccaacgtaccgtagatcggcgccagcgccccgtaaataacgctcggagccagccc > 2:780566‑M1/1‑13 (MQ=255) cAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgcatcccac < 1:772486‑M1/143‑132 (MQ=255) gATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgcatcccactc > 1:953673‑M1/1‑10 (MQ=255) tCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgcatcccactctt < 1:458454‑M1/143‑136 (MQ=255) aGCCAGgcgcaagctcagtccgggacagggcgataccgaagctcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgcatcccactctttg < 2:1183175‑M1/143‑138 (MQ=255) ccAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatccgccgcgcgataaacgacgtcacccacgtaccgtcgatcggcacccgcgccccgtcgataccgttcggtgcctcgcagtgctgcgg > 2:541213‑M1/1‑4 (MQ=255) cAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggccatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagagatcgttcggtgcatcgcactctttggtc > 1:251356‑M1/1‑3 (MQ=255) aGgagcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgattagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagagctccgtagatatcgttcggtgcatccgactctttggtac > 1:619033‑M1/1‑2 (MQ=255) | ACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGAACAGGCCGAAGGCCATCGTCGCCATCGAGAGCGTCAGCGCAATACGGTTTTTGAGGCGGCGACGCGCCTGCATTTTGCGGCGAGATTCAGCCAGCGCCGCAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCT > NC_000913/3909174‑3909451 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |