| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 258674 | NA (NA) | 39 (0.930) | 35/282 | 0.2 | 100% | intergenic (+775/‑2) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | 1303173 = | 0 (0.000) | coding (275/921 nt) | oppB | oligopeptide ABC transporter permease | |||||
GTGATGGCCAATATCGAAGCGAAATATCATCTTAATGATCCGATCATGACACAGTATTTCAGCTACCTGAAACAACTGGCGCACGGTGATTTCGGTCCATCGTTTAAATATAAAGATTATTCGGTCAATGACTTGGTTGCATCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTT > NC_000913/1303031‑1303315 | agcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacc < 1:200973‑M2/1‑1 (MQ=255) tgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagaaagttgacagcagcacCCAGTTTTc > 1:4202‑M2/135‑143 (MQ=255) gtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTcc < 1:221149‑M2/10‑1 (MQ=255) cggcggtgcgtgtgccgctacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGt < 2:120279‑M2/13‑1 (MQ=255) ggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagcaagttggcagcatcccCCAGTTTTCCCGTTTCt > 1:521871‑M2/127‑143 (MQ=255) tgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGc < 2:326410‑M2/19‑1 (MQ=255) ccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTgg < 1:5181‑M2/27‑1 (MQ=255) gcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcccCCAGTTTTCCCGTCTCTGCCACACTGGGAGCCgc > 2:629006‑M2/110‑143 (MQ=255) ccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCgcagc < 2:672714‑M2/37‑1 (MQ=255) cgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCAttttt < 2:394374‑M2/43‑1 (MQ=255) tagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAGACTGGGAGCCGCAGCATTTTTCGTTGc > 2:1381‑M2/95‑143 (MQ=255) cagcggaacacgagggacagctgatagacacagaagccactggagcacctcaaaaacaccatcatacaccaaaccagtaagttggcagcatcacCCAGTGTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGc < 2:356999‑M2/49‑1 (MQ=255) agctgaacaggagggccagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCg < 2:278807‑M2/50‑1 (MQ=255) gctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCCAACTGGAAGCCGCAGCATTTTTCCCTGCgg > 2:120030‑M2/93‑143 (MQ=255) acaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATa < 2:160505‑M2/56‑1 (MQ=255) aggaggcacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACt < 2:654017‑M2/58‑1 (MQ=255) acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGtt < 2:587869‑M2/65‑1 (MQ=255) gatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTaatactgggtgcacgtgct > 1:667833‑M2/73‑135 (MQ=255) aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCGTTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGt > 2:29751‑M2/68‑143 (MQ=255) aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTCGTGCTGGCGt > 2:227191‑M2/68‑143 (MQ=255) aactcactggagcccgtcaaaaacaccatcttaccctacatcagtaagttggcagcatcgcCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGc < 1:97496‑M2/82‑1 (MQ=255) cactggagcgccgcaaaaacaccagcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTGTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCa < 2:591408‑M2/86‑1 (MQ=255) ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTaaaacaaaa < 2:315633‑M2/97‑1 (MQ=255) caaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGACGCAGCATTTTTCCTTGCGGTAATACTGGGTGATAGTGCTGGCGTTATTGCCGCACTAaaccaaaaca > 1:68104‑M2/45‑143 (MQ=255) acatgacgcgcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTGGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACAcc < 1:381061‑M2/101‑1 (MQ=255) aaaacaccctcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTGGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACAcc < 2:141429‑M2/101‑1 (MQ=255) aaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCa > 2:268153‑M2/42‑143 (MQ=255) acaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCAGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCaaa > 1:711662‑M2/40‑143 (MQ=255) caccatcatacacgacaccagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAAt < 2:59850‑M2/105‑1 (MQ=255) catcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAAATGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAAAAAAACACTAAAAggg > 2:104749‑M2/36‑143 (MQ=255) tcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAACCTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAGACAAAACACCGactggacc > 1:396621‑M2/34‑140 (MQ=255) ctaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCCGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCg > 1:126097‑M2/27‑143 (MQ=255) aagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGGCTATACCGTGATGGGGCt > 2:44262‑M2/17‑143 (MQ=255) aaggtggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACAGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTAGTGCCGCATTAAGACAAAACACCAAATGGGACTATACCGTGATGGGGCt < 1:187950‑M2/127‑1 (MQ=255) agttggccgtctcacCCAGCTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATGTTTCCTTGCGGTAATACTGGTTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTg < 1:539731‑M2/128‑1 (MQ=255) agttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACCCCAAATGGGACTATACCGTGATGGGGCTg > 1:272353‑M2/16‑143 (MQ=255) agcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGa > 2:119788‑M2/9‑143 (MQ=255) atcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCg < 2:624423‑M2/138‑1 (MQ=255) atcacCCAGTTTCCCCGGTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCg < 2:186999‑M2/138‑1 (MQ=255) cacCCCGTTTGCCCGTTGCGGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCggg < 2:131657‑M2/140‑1 (MQ=255) CCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGtt < 1:268153‑M2/143‑1 (MQ=255) | GTGATGGCCAATATCGAAGCGAAATATCATCTTAATGATCCGATCATGACACAGTATTTCAGCTACCTGAAACAACTGGCGCACGGTGATTTCGGTCCATCGTTTAAATATAAAGATTATTCGGTCAATGACTTGGTTGCATCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTT > NC_000913/1303031‑1303315 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |