New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1979489	3 (0.100)	21 (0.700)	20/284	0.5	87.5%	intergenic (‑274/‑264)	insA/uspC	IS1 repressor TnpA/universal stress protein
	?	NC_000913	= 2290111	NA (NA)					intergenic (‑32/+1)	insH1/yejO	IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system

GAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCG  >  NC_000913/2289972‑2290251                                                                                                                                            |                                                                                                                                             gAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCGTGATGAACCCTGTTCTATGGCTCCGGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCCTCCaga                                                                                                                                           >  2:420864/1‑141 (MQ=2)   aaaTCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAAc                                                                                                                                         >  2:505676/1‑143 (MQ=32)       ctctTTTCTGGTCTGACGGCGCCTACTGCTGAATTCACTGTCGGCGAACGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTg                                                                                                                                     <  2:327669/143‑1 (MQ=255)            ttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTACATAACGCTGTAGca                                                                                                                                >  2:85930/1‑142 (MQ=255)                      aCGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAg                                                                                                                      >  2:470598/1‑143 (MQ=255)                      aCGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAACTTACATAACGCTGTAGCCACCAGAACAg                                                                                                                      >  1:270721/1‑143 (MQ=255)                             ttACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGAGGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGc                                                                                                               <  2:319663/143‑1 (MQ=255)                               aCTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCgg                                                                                                             >  2:294922/1‑143 (MQ=255)                               aCTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGAGCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCgg                                                                                                             <  1:74333/143‑1 (MQ=255)                                            cTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATGTTGCGGAACGACAACgaga                                                                                                >  2:65876/1‑143 (MQ=255)                                                  gggAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGa                                                                                          <  2:230201/141‑1 (MQ=255)                                                  gCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATTAGGGACTTGTTCGCACCTTACATAACGCTGTAGCCCCCAGAACAGATATTGCGGCACGACAAAGAGAAACCGa                                                                                          >  1:69405/1‑143 (MQ=18)                                                             ttGATTACTCTTGATGAACCATGCTCTATGGCTACAGATGACAAACATGATCTATTATCAGTTACTTGTTCGCAACTTCCATAACGCTGTAGCCACCAGACCAGATATTGCGGAACAACAAAGAGAAACAGAACCAGATTGAt                                                                               <  1:155325/143‑1 (MQ=25)                                                             ttGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGAt                                                                               <  2:318879/143‑1 (MQ=255)                                                              tgatgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATg                                                                              >  2:146266/1‑143 (MQ=255)                                                                     tCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAg                                                                       >  1:409860/1‑143 (MQ=255)                                                                       atgatgAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGCCTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCt                                                                     >  1:229908/1‑143 (MQ=255)                                                                         gatgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCttt                                                                   >  1:194683/1‑143 (MQ=255)                                                                                              ccAGATGACAAACATGATCTCATATCAGAGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCt                                              <  2:49372/143‑1 (MQ=255)                                                                                                      cAAACATGATCTCATATCAGGGACTTGTTCGCACCACCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAAGTGCGCTTAAAAg                                      >  1:431137/1‑143 (MQ=39)                                                                                                       aaaCATGATCTCATATCAGGGACTTGTTCACACCTTCCATAACGCTGTAGACACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCATATGAAATTAAATGCTGGTAAAAgg                                     >  1:295580/1‑142 (MQ=39)                                                                                                         aCATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTCTGAACTTAATTGCTGTTAAAAGCAt                                   >  2:404539/1‑143 (MQ=255)                                                                                                           aTGAGCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCAGGAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGAGTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTg                                 <  2:85327/143‑1 (MQ=255)                                                                                                                 tcATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACa                           <  2:100556/143‑1 (MQ=255)                                                                                                                   atatCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTATCATCCTATGAAAATAATCGCTATTAAAAGCATTGGGTACata                         >  1:469994/1‑141 (MQ=255)                                                                                                                       cAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAAt                     >  2:83466/1‑143 (MQ=255)                                                                                                                                  tCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTc          <  2:244617/143‑1 (MQ=255)                                                                                                                                    gCACCTTCCATAACGCTGTAGCCACCAGCACAGATATTGCGGAACTACACAGAGAAACAGAACCAGGTTAGTGCATTGAGCTTTCGTGCTATGCACTTAATTGGCGTGCAAAGCATTGGTTAGACTAAATAGCCATAGCTcac        >  1:161460/1‑141 (MQ=255)                                                                                                                                        cTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCAATAGCTCCATAcc    >  1:489149/1‑143 (MQ=255)                                                                                                                                          tCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCg  <  2:25412/143‑1 (MQ=255)                                                                                                                                            |                                                                                                                                             GAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCG  >  NC_000913/2289972‑2290251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.