| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 257908 = | NA (NA) | 27 (0.900) | 23/284 | 0.3 | 100% | intergenic (+9/‑768) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | = 1293039 | 0 (0.000) | intergenic (‑117/‑488) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase | |||||
TTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACG > NC_000913/1292897‑1293177 | ttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTACATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCGAAATTGTTCTTTATTTTGTgccg > 1:397334/1‑143 (MQ=255) ttAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgac < 2:290363‑M2/143‑10 (MQ=255) ttttgccgttacgcaccaccccgtcagtagctgaacaagacggacagctgctagaaacagaagcccctggagcacctcaaaaacaccatcatacactaaatcagtaagctaacagcataaccTTGTACCgccaataaataact < 1:136342‑M1/21‑4 (MQ=255) ttgcctttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCttt > 2:483195‑M1/121‑143 (MQ=255) gCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaac < 1:97340‑M2/143‑16 (MQ=255) cTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattg < 1:144216‑M2/143‑22 (MQ=255) acgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccttgtgccgcaaatcaatgtgaattgagtaag < 2:323449‑M1/31‑15 (MQ=255) gcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAACAtt < 1:314881‑M1/33‑1 (MQ=255) ttgtgatCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATCGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgt > 1:333054‑M2/3‑115 (MQ=255) tctcCAACTTATATTGGGGTCGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatg > 2:212248‑M2/1‑109 (MQ=255) gtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCcagatat < 2:242356‑M1/43‑4 (MQ=255) ctcAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttcttgatagtgttttatgt < 2:419726‑M2/143‑36 (MQ=255) tcAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgtt < 2:82293‑M2/143‑37 (MQ=255) tatTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtcatgactccaacttattgatagtgttttatgttcagataatg < 1:471659‑M2/143‑46 (MQ=255) aacaggagcgacagctgatagaaacagaatccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCata > 1:67324‑M1/90‑143 (MQ=255) ggggTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccg > 2:484469‑M2/1‑94 (MQ=255) aggagggacggctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAg > 1:432486‑M1/87‑143 (MQ=255) gagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGcc < 2:23632‑M1/59‑1 (MQ=255) ggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTa < 2:79715‑M1/62‑1 (MQ=255) gacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTAt > 2:132199‑M1/81‑143 (MQ=255) tgttgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttg > 1:13727‑M2/1‑85 (MQ=255) gctgatagaatcagatgctactggagcatctcaaaaataccattatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTac > 2:395303‑M1/77‑143 (MQ=255) gctgatagaaacagaagccactggagcaactcaaaaacaccagcagacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTac > 2:102127‑M1/77‑143 (MQ=255) ttgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtc < 2:125726‑M2/143‑61 (MQ=255) tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATACATATCTTTTCATAAAATTAGCCAGAAAGGACGCGCCATCTCGCCCTAATTacac < 1:148713‑M1/69‑1 (MQ=255) gatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACAcc < 1:284671‑M1/70‑1 (MQ=255) atagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCg > 1:309061‑M1/73‑143 (MQ=255) aGGTAATAATAGAGACTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatg > 1:50075‑M2/1‑80 (MQ=255) aGGTAATAATAGAGAATTAAATTCAGTTGTGGAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatg > 2:238700‑M2/1‑80 (MQ=255) tagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTCTTTACACCga < 2:323447‑M1/72‑1 (MQ=255) tagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCga > 2:508889‑M1/72‑143 (MQ=255) ggtttttatggagccttAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc > 1:177126‑M2/8‑79 (MQ=255) gctaattataGAGCTTTAAATTCAGTTGTTATCTTGCTAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTTTGCCGggtaatgattccaatttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc > 1:118065‑M2/3‑79 (MQ=255) agaaacagaagccactggagcacctcaaaaacaccagcatacactaaatcagtaagtgggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCgat > 2:299442‑M1/71‑143 (MQ=255) gaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACcgatc < 2:96339‑M1/74‑2 (MQ=255) aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCgatga < 2:490095‑M1/75‑1 (MQ=255) taataGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatggctttgtcatgcagctc > 2:370316‑M2/1‑74 (MQ=255) ataGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcca > 2:272368‑M2/1‑72 (MQ=255) gaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCg > 2:128949‑M1/64‑143 (MQ=255) ccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGCTGATTTCgcagc < 1:72070‑M1/84‑1 (MQ=255) cactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCgcagca > 2:55615‑M1/59‑143 (MQ=255) actggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCAc < 2:53001‑M1/86‑1 (MQ=255) tAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg > 2:313908‑M2/1‑63 (MQ=255) ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGTAGCACGTGAGGTTaa < 1:331963‑M1/96‑1 (MQ=255) catcaccgacaagatgcactagatcagtaagttgtcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaaaa > 1:79678‑M1/46‑143 (MQ=255) caaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGAGGCGGCATATAGCGCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaaaa < 2:81362‑M1/98‑1 (MQ=255) aaacaccatcatacactaaatcagtaagttggcagcaccaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAaacgt < 1:122782‑M1/101‑3 (MQ=255) acactaaatcagtaagttggcagcatcaccTTGTGCTGCCAATAAATATCTTTTCATATAATTATCCAGAATTTACGCTGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGt > 2:467242‑M1/31‑143 (MQ=255) actaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTca < 2:269031‑M1/115‑1 (MQ=255) aatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATACAATAAGCCAGAAAAGACGCGGCATTTAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACAtt < 2:384226‑M1/119‑1 (MQ=255) tcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACAtttt < 2:42864‑M1/121‑1 (MQ=255) gAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgcca > 2:301973‑M2/1‑30 (MQ=255) cagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTAGACCGATGATGTCTCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTa < 2:97058‑M1/122‑1 (MQ=255) taggttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATgg > 2:368164‑M1/19‑143 (MQ=255) taaatgtggttctttatGTTGTGCCGggtaatgactgcaacttatttgtagtgttttatgttcagataatgcccgatgactgtgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtg > 1:521556‑M2/9‑26 (MQ=255) tCAAAATTTGTCTTTATTTTGTGCCGattaattatcccaatttatttgtagtgttttattttcagataatgcccgatgactttttcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtg > 1:133625‑M2/1‑26 (MQ=255) agtttgcagcatcaccGTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGTAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATgggg > 1:181206‑M1/17‑143 (MQ=255) agttggcagcatccccTTGTGCCGCCAATAAATATCTGTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAACACGTGAGGTTAAAACTTCCTAATTCATGTCACATTTTATgggg > 1:210553‑M1/17‑143 (MQ=255) ttGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcct > 2:316756‑M2/1‑20 (MQ=255) cagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCGATTTACACCGATGATTTCGCAGCGCGTGAGAGTAAATCTTCCTGATTCATGTCAGAgtttattgggtgacta < 1:67101‑M1/133‑7 (MQ=255) agcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGACTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGCCCCatcttatggggcgaccat < 1:117311‑M1/134‑8 (MQ=255) tCTTTATTTTGTGCCGgttaatgactccaacttattgatagtgttttatgttcagatcatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcaga > 1:136907‑M2/1‑16 (MQ=255) gcatcaccGTGCGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATc > 2:412635‑M1/9‑143 (MQ=255) tttATTTTGTGCCGggtaatgactccaacttatggatagtgttttatgttcagataaggcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccggcccagccgtgccaggggctgcctcagagt < 2:370379‑M2/143‑130 (MQ=255) gttttgGGCCGggtagtgactccaacttattgatagcgtgttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcag > 1:201444‑M2/2‑11 (MQ=255) accTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGCAAAGACGCGGCATATAGCCCTATTTACACCTATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAgg > 1:514860‑M1/4‑143 (MQ=255) aTTTTGTGCCGggttatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgagtttgagaacgacagcgacttccgtcccagtcgtgcctggtgctgcctcagattcag > 1:28598‑M2/1‑11 (MQ=255) tgCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatg > 2:168156‑M2/1‑5 (MQ=255) | TTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACG > NC_000913/1292897‑1293177 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |