New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 153989	0 (0.000)	23 (0.770)	19/284	0.5	100%	coding (1438/2598 nt)	htrE	putative outer membrane usher protein
	?	NC_000913	273955 =	NA (NA)					intergenic (+1/+146)	ykfC/insH1	CP4‑6 prophage, conserved protein,Phage or Prophage Related/IS5 transposase and trans‑activator

TTAATGACGGCTTTATCTTTCTGGGGCACAGGCTCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTC‑AACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCA  >  NC_000913/273823‑274096                                                                                                                                      |                                                                                                                                              ttAATGACGGCTTGATCTTTCTGGGGCACAGGCTCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTC‑AACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGa                                                                                                                                     <  1:148911/143‑1 (MQ=255)                 cTTTCTGGGGCACAGGCTCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTC‑AACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATAGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAAttc                                                                                                                     >  2:386166/1‑143 (MQ=255)                             ccggCTCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTC‑AACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGAc                                                                                                         <  1:20657/141‑1 (MQ=255)                                    aTTCGCAACGGCCGTCGTGATGGCGAGATGCGAGTGGTCTC‑AACGAGCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtca                                                                                                  <  1:474976/143‑1 (MQ=38)                                         cAAACGGCGTCGTTGTGGCGAGATGCGAGCGGCCTC‑AACGAGCCCGCAGGATAAAGCCAGAAACTTCGCGGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttca                                                                                             <  1:77855/143‑1 (MQ=25)                                                        cggcgcggggCGAGTGG‑CTCGAACGATCCAGGAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTGATGGAAGGTGCGCATAAGCGGGGAAAGTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGa                                                                              <  1:452098/134‑1 (MQ=21)                                                                tGCGAGTGGTCTC‑AACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttt                                                                      <  1:440146/143‑1 (MQ=255)                                                                 gCGAGCGGTCTC‑AACGGTCCCGCAGGAGAAAGCCAGAAACGGCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtttt                                                                     <  1:335553/143‑1 (MQ=255)                                                                    cgTGGTCTC‑AACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtc                                                                  <  2:175974/142‑1 (MQ=255)                                                                     gTGGTCTG‑AACGTTCCCGCAGGAGAAAGCCAGAGACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtct                                                                 <  1:241165/143‑1 (MQ=255)                                                                     gTGGTCTC‑AACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGCTTGAGCCGAtttttccc                                                                 >  1:508314/1‑140 (MQ=255)                                                                        gTCTC‑AACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCCTCGCTGACAGCACTGTTCTGGAAGGTGCGAATCAGCGGGGAAATTCTTCTCGGCTGACGCAGTCATTTCATTTCTTCATGTTTGAGCCGCTCTTTTCTccc                                                              >  1:264595/1‑143 (MQ=21)                                                                              aaCGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACCGCCATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaaa                                                         >  2:410278/1‑143 (MQ=255)                                                                                            agaAAGCGAGAAGCGTCGCCGCATCGCGGACAGCACTGTTATGGGAGGTGCGGATAAGCGGGGAAATTCTTGTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGc                                           <  1:159456/143‑1 (MQ=17)                                                                                                  ccAGAATCTTCGCCGCATCGCTGTCAGCACTGTTATGGATGGTGCGTATATGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATGTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTAttt                                     <  2:60225/143‑1 (MQ=17)                                                                                                  ccAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGCATCAGCCTAtgt                                     >  1:94616/1‑141 (MQ=255)                                                                                                      aaaCTGCGCCGCTGCGCAGACCGCACTGTGATGGAAGGTGCGAATAAGCGGGGAAATTCTGCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGGAAATGCCTTGAATCAGCCTATTTAGAc                                 <  2:134992/143‑1 (MQ=14)                                                                                                           tCGCCGCGTCGCTGACAGCACTGTTATGGAAGGTGCGAATAGGCTGGGAGTTTCTTCTCGGATCACGCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGttt                            <  1:393731/143‑1 (MQ=14)                                                                                                               cgcATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGCttcttc                        <  2:448442/143‑1 (MQ=255)                                                                                                                     gCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCCGCCTCAGTTATTTTATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTCCTTCGCCAtt                  >  2:267099/1‑143 (MQ=14)                                                                                                                        gACAGCACTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTaa               <  1:465334/143‑1 (MQ=17)                                                                                                                         aCAGCACTGTTATGTCAGGTGCGAATAAGCGGGCAAATTCTTCTCGGCTGACTCATTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAg              <  1:20926/143‑1 (MQ=255)                                                                                                                            gCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCg           <  1:26073/143‑1 (MQ=34)                                                                                                                                tGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGGATCAGGCTAATTAGACCGTTTCTTCGCAAGTTAAGGCGTTAt       >  1:474908/1‑143 (MQ=11)                                                                                                                                     tGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCa  <  2:361173/143‑1 (MQ=11)                                                                                                                                      |                                                                                                                                              TTAATGACGGCTTTATCTTTCTGGGGCACAGGCTCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTC‑AACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCA  >  NC_000913/273823‑274096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.