New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	153986 =	1 (0.030)	54 (1.800)	34/284	0.0	98.2%	coding (1441/2598 nt)	htrE	putative outer membrane usher protein
	?	NC_000913	= 275149	NA (NA)					intergenic (‑32/‑176)	insH1/mmuP	IS5 transposase and trans‑activator/CP4‑6 prophage, putative S‑methylmethionine transporter

AGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGTATAACAAACCTTCTTT  >  NC_000913/275009‑275290                                                                                                                                             |                                                                                                                                              aGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCCGATGACAAACATGATCTCATATCAGGGACTTGGTCGCACCTTCCgt                                                                                                                                             >  2:276482/1‑142 (MQ=11)  gAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGa                                                                                                                                            >  1:434185/1‑143 (MQ=32)    aaaTCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGGTCTCATATCAGGGACTTGTTCGCACCTTCcggcgg                                                                                                                                          >  2:355139/1‑143 (MQ=14)    aaaTCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGTGACTTGTTCGCACCTTCCGGAgg                                                                                                                                          <  2:135545/143‑1 (MQ=18)     aatattttttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGc                                                                                                                                         >  1:134716/7‑143 (MQ=21)     aaTCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGCAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGCCTCGTTCGCACGTTCCGGAAGc                                                                                                                                         >  1:408514/1‑143 (MQ=11)         tctTTTCTGGTCTGACGGCGCTTACTGCTGACTTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGGTCTATGGCTCCAGATGACAAACATGATCCCAGACCCGGGACCTGTCCCGGCCTTCCgtccggaacc                                                                                                                                     >  1:283880/1‑134 (MQ=1)         tcgtttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTa                                                                                                                                     <  2:471068/140‑1 (MQ=38)            tcccTGGGCGGACGGTGCTTACTGCGGAATTCACTGTCGGCGAAGGTACGTTGATGACTCCTGATGAACCCTGTTCGATGGCTCCAGATGACAAACAGGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGa                                                                                                                                  <  1:336135/140‑1 (MQ=14)                      gACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTCGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGAGACTTGTTCTCACCTTCCGGACGCGTTATGCGCTGGCGGcc                                                                                                                        >  1:93195/1‑143 (MQ=14)                       aCGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGCGGCGTTATGAGCTGGCGGccc                                                                                                                       >  2:440232/1‑143 (MQ=255)                          gcgcTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCctt                                                                                                                    >  1:351779/1‑143 (MQ=255)                          gcgcTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCCGGCGGCCCttt                                                                                                                    <  2:159223/143‑1 (MQ=255)                             cTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTg                                                                                                                 <  2:13180/143‑1 (MQ=255)                                    ctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGa                                                                                                          >  2:61470/1‑143 (MQ=255)                                        aTTCACTGTCGGCGAAGGTAAGTTGATGACTCATGACGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGattat                                                                                                      >  2:339162/1‑143 (MQ=255)                                                  ggCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGGGTTATGAGCTGGCGGCCCATTTTGAATCTGATTATTAATCCCCAc                                                                                            >  1:234872/1‑143 (MQ=255)                                                    cGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATAAGGGACTTGTCCGCACCTTCCGGAGGCGTTATTAGCCGGCTGCCCTTTTTGTATCTGATTATTAATCCCCAccc                                                                                          >  1:52018/1‑143 (MQ=21)                                                           aaGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTa                                                                                   >  2:402857/1‑143 (MQ=255)                                                              gtgatgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAACCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGCTATGAGCTGGCGGCCCTTTTTGTATCTGAGTATTAATCCCCACCCGCCATTACgc                                                                                >  2:414434/2‑143 (MQ=21)                                                                         tgatgcACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCgg                                                                     <  2:229676/143‑1 (MQ=255)                                                                         tcatgaACCCCGTTCTATGGCTCCAGATGACACACATGATCTCATCTCAGGGACTTGTTCGCACCTTCCGGAGGCGTTACGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCgg                                                                     <  2:170951/141‑1 (MQ=255)                                                                                cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCCCCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTCTTGTCCCTGATTATTACTCCCCACCCGCGCTTAAGCGCCCGGCCGGGGcgacct                                                              >  1:94987/1‑138 (MQ=21)                                                                                  cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGAGACTTGTTCGCACCTTCCGGAGGCGGTATGAGCTGGCAGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCCGCCCGGGCTTCAGCg                                                            >  2:75815/1‑143 (MQ=25)                                                                                     ttCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTACCTGATTATTAATCCCCACCCGCTATTAAGCGCCACGCGCGGGCATCTGCGTCt                                                         >  1:422148/1‑143 (MQ=255)                                                                                                  gATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGa                                            <  2:12362/143‑1 (MQ=255)                                                                                                        aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTGTGGTGCAGGGGTGACTTTGc                                      >  2:450754/1‑143 (MQ=255)                                                                                                              gATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGGTGACTTTGCATTCTg                                >  2:336152/1‑143 (MQ=255)                                                                                                               ctctcAGAGCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGt                               <  2:520873/142‑1 (MQ=255)                                                                                                                       tCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCAGCGGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTCAACATAc                       >  2:166144/1‑143 (MQ=255)                                                                                                                               ttGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGtata               >  2:341241/1‑143 (MQ=255)                                                                                                                               ttGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGtata               >  2:464646/1‑143 (MQ=255)                                                                                                                                            ccGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGTATAACAAACCTTCttt  <  2:434185/143‑1 (MQ=255)                                                                                                                                             |                                                                                                                                              AGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGTATAACAAACCTTCTTT  >  NC_000913/275009‑275290

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.