New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3640441 =	46 (1.900)	4 (0.170)	3/486	NT	9.9%	coding (332/435 nt)	uspA	universal stress global response regulator
	?	NC_000913	3640977 =	27 (1.130)					coding (117/1470 nt)	dtpB	dipeptide and tripeptide permease B

GTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAGGTTAATAAATATGAATACAACAACACCCATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCACTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCGCTGTCGGTAACGGC  >  NC_000913/3640713‑3641220                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                    gtgtGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAGGTTAATAAATATGAATACAACAACACCCATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTTa                                                                                                                                                                                                                                           <  2:198859/275‑1 (MQ=255)   gtgATCATCTTGTTATTTTCTTTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACATATGTAAACTTTTTCGCGCGTTATCCCTTACTCGTTCATACTTTTCAGGATGTTATTGGAAGGTTAATAAATATGAATACAACAACACCCATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTACTTGCGGTTTTCTTCGTTaaa                                                                                                                                                                                                                                         <  2:98505/275‑1 (MQ=255)                                 gtgtATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAGGTTAATAAATATGAATACAACAACACCCATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTTAACCAGCTTGGATTCCCGCCAGAGCAGGCtt                                                                                                                                                                                                             >  1:227057/1‑273 (MQ=255)                                    ggattttgattgcgtacgcagaccgtaggccagataaggtgtttacgctgatcaggtaacaaggcgcgccaaaaagcaaaacgcccgcatatgcgggcgttcaggaacacgtcgtagagggaagattattcttcttcgtcgcgcagcggaacaatcagcatatcaacgtgaacggtgttgatcagctgacgttcggaagacatcagtttgctccagaagtcctggtggtTTTCTTCGTTAAACCGCTTGGATTCCCGCAAGAGCAGGCTTTTGTc                                                                                                                                                                                                        >  1:72669‑M2/230‑275 (MQ=255)                                    ggattttgattgcgtacgcagaccgtaggccagataaggtgtttacgctgatcaggtaacaaggcgcgccaaaaagcaaaacgcccgcatatgcgggcgttcaggaacacgtcgtagagggaagattattcttcttcgtcgcgcagcggaacaatcagcatatcaacgtgaacggtgttgatcagctgacgtgcggaagacatcagtttgctccagaagtcctggcggtTTTCTTGGTTAAACAGTTTGGATTCTCCCCAGGCCAGGCTTTTGTc                                                                                                                                                                                                        >  1:97006‑M2/230‑275 (MQ=255)                                      ttAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAGGTTAATAAATATGAATACAACAACACCCATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGGGCAGGCTTTTGTCAc                                                                                                                                                                                                      >  1:21749/1‑275 (MQ=255)                                              ttCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAGGTTAATAAATATGAATACAACAACACCCATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTCAAACAGCTTGGATTCTCGCAAGCGCCGGCGTTTGTccggtatctt                                                                                                                                                                                               >  2:76540/1‑265 (MQ=255)                                                  ccGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAGGTTAATAAATATGAATACAACAACACCCATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGc                                                                                                                                                                                                                   <  1:76539/250‑1 (MQ=255)                                                           tatTAAGAATCTCTGACAGCTGTAAACTTTTTCGCGCGGTATCCCTTACGCGTCCATACTTTTCAGGATGGTATTGGAAGGTTAATAAATATGGATACAACAACACCCATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCt                                                                                                                                                                                 <  1:12498/275‑1 (MQ=255)                                                                               tGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAGGTTAATAAATATGAATACAACAACACCCATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGCCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCCTTTGTCCCTTTTGGTTCTTTTGCTGCGCTGGTCTATGGCCCCATTTccc                                                                                                                                                             >  1:168604/1‑274 (MQ=255)                                                                                gTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAGGTTAATAAATATGAATACAACAACACCCATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCTCTGGTTTATGGCCTCATTTccct                                                                                                                                                            >  1:60036/1‑273 (MQ=255)                                                                                        tttCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAGGTTAATAAATATGAATACAACAACACCCATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGCCTCATTTCCATTggcggc                                                                                                                                                     >  1:195547/1‑274 (MQ=255)                                                                                        tttCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAGGTTAATAAATATGAATACAACAACACCCATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCAATTTTGGGTCTTTTGCTGCGCTGGTCTTTGGCCTCATTTCCTTTgggggc                                                                                                                                                     >  1:233780/1‑274 (MQ=255)                                                                                                aaggcgcgccaagaagcagaacgcccgcatatgcgggcgttcaggaacacgtcgtagagggaagattagtctgcgtggtcgcgcagcggaacaagcagcatatcaacgtgaacggtgttgatcagctgacgtgcggaagagatcagtttgctccagaagtcctggtggtTTTCTGCGTTAGACAGCTTGGATTCTCGCAAGGGCAGGCTTTGGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCgg                                                                                                                                             <  2:72670‑M2/105‑1 (MQ=255)                                                                                                                  aTACTTTTCAGGATGGTATTGGAAGGTTAATAAATATGAATACAACAACACCCATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGAcc                                                                                                                          <  1:41467/275‑1 (MQ=255)                                                                                                                     cTTTTCAGGATGGTATTGGAAGGTTAATAAATATGAATACAACAACACCCATGGGGATGCTGCAGCAACCTCGCCCATTTGTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTTAATCAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCaaa                                                                                                                       <  1:170426/275‑1 (MQ=255)                                                                                                                       gttCCGGATGGTATTGGAAGGTTAATAAATATGAATACAGCAACACCCATGGGGATGCTGCAGCAACCTCGCCCTTTTTTCATGATCTTTTTTGTCGAGTTATGGTAGCGATTCGGCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACg                                                                                                                     <  2:233782/274‑1 (MQ=255)                                                                                                                            ggATGGTATTGGAAGGTTAATAAATATGAATACAACAACACCCATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGGGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCa                                                                                                                <  2:21749/275‑1 (MQ=255)                                                                                                                                        tcaggaaaactgcttagagggaagattattcttcttcgtcgcgcagcggaacaatcagcatatcaacgtgaacggtgttgatcagctgacgtgcggaagacatcagtttgctccagaagtcctggtggtTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAg                                                                                                    <  2:97007‑M2/146‑1 (MQ=255)                                                                                                                                            ttAATAAATATGACTACAACAACACCCATGGGGATGCTGCAGCAACCTCGCCCATTTTTCGTGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCAc                                                                                                 <  2:28678/274‑1 (MQ=255)                                                                                                                                            ttAATAAATATGAATACAACAACACCCATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCAc                                                                                                 <  2:227058/274‑1 (MQ=255)                                                                                                                                            ttAATAAATATGAATACAACAACACCCATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGCCTCATTTCCATTGGAGGCTATGTCCGGTACCACCCTCTGGGGGCCAAACCCCACATTGTTCTTGGCGCaac                                                                                                >  1:160503/1‑273 (MQ=255)                                                                                                                                            ttAATAAATATGAATACAACAACACCCATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTCGTTTTGCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTTGCCGCCCACCTGCTGGGGACCAACCGCACCATTAGTCTTggg                                                                                                     >  1:28678/1‑269 (MQ=255)                                                                                                                                                                             atgtgtaagcaACCTTTCCTATGTTTCATGATCTTTTTTGTCGATTTAGTGGGGCTATTCGGCTACTACGGCGTGCAGTGCGTACTGGCGGTTGTCTTCGTTAAACATCTTGGATTCTCTCAAAAGCAGGCTTTTGTCACGTTTGGTGCTTTTGTTGCGCTGGTCTATGGCCTCATTTCCATTGGCTGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCACTTTTGCTGGCGATTGGCTACTTCATGACCGGCAt                                                               <  2:170769/268‑1 (MQ=255)                                                                                                                                                                             aTGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCTAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCACTTGTGCTGGCGATTGGCTACTTCATGACCGGCAt                                                               <  2:168605/275‑1 (MQ=255)                                                                                                                                                                               gctgcAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCACTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCCTCTGCTGGGGACCCAACCCCCCCTTGTTCTTGGATCCATTTGGCTGGCGGTTGGcgtcttacttgccggcat                                                               >  1:78241/1‑256 (MQ=255)                                                                                                                                                                                 tgcAGCAACCTCTCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCACTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCg                                                           <  2:60036/275‑1 (MQ=255)                                                                                                                                                                                             gCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGCCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCCCTTGTGCTGGCGATTGGCTACTTCATTACGGGCATTTCGGTACTTAAGcc                                                >  1:146672/1‑274 (MQ=255)                                                                                                                                                                                                           gtCTTTTTTGTCGAGTTATTGGAGCGATTCGGCTACTACGGGGTGCAGGGCGGACTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGTGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCACTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCAt                                 <  2:160504/274‑1 (MQ=255)                                                                                                                                                                                                                                          gCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTTAGACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCTCTTTTGGTGCTTTTGCTGCACTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCACTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCGCTGTCGGTAACGGc  <  2:78242/275‑1 (MQ=255)                                                                                                                                                                                                                                          gCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTTAAACCGCTTGTATTCTCGCAAGAGCAGGCGTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCACTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCGCTGTCGGTAACGGc  <  2:186525/275‑1 (MQ=255)                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                    GTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAGGTTAATAAATATGAATACAACAACACCCATGGGGATGCTGCAGCAACCTCGCCCATTTTTCATGATCTTTTTTGTCGAGTTATGGGAGCGATTCGGCTACTACGGCGTGCAGGGCGTACTGGCGGTTTTCTTCGTTAAACAGCTTGGATTCTCGCAAGAGCAGGCTTTTGTCACTTTTGGTGCTTTTGCTGCGCTGGTCTATGGCCTCATTTCCATTGGCGGCTATGTCGGCGACCACCTGCTGGGGACCAAACGCACCATTGTTCTTGGAGCACTTGTGCTGGCGATTGGCTACTTCATGACCGGCATGTCGCTACTTAAGCCTGACCTGATTTTCATCGCCCTGGGGACTATCGCTGTCGGTAACGGC  >  NC_000913/3640713‑3641220

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.