New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2288917 =	NA (NA)	74 (0.950)	59/284	0.2	96.1%	intergenic (‑5/+146)	yejO/insH1	pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system/IS5 transposase and trans‑activator
	?	NC_000913	3526447 =	3 (0.040)					intergenic (‑300/‑20)	nudE/yrfF	adenosine nucleotide hydrolase, Ap3A/Ap2A/ADP‑ribose/NADH hydrolase/putative RcsCDB‑response attenuator, inner membrane protein

TTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCC  >  NC_000913/2288776‑2289055                                                                                                                                              |                                                                                                                                           ttttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGGATATaagg                                                                                                                                           >  1:92378/1‑143 (MQ=255)   ttagttGCTGTTCTCCGCCATGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTCTTCCAGGACAACACCATCAACAGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATaaggaa                                                                                                                                         <  2:465594/138‑1 (MQ=255)         gCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCCACAGTTGATGCCAATGCCATGGGTGAATCTACGGAAGGTGCg                                                                                                                                   >  2:430665/1‑143 (MQ=255)         gCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCCATGCTATGGGTGACTATAACGAACGTGCg                                                                                                                                   >  2:618570/1‑143 (MQ=255)            gTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCACCTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAAt                                                                                                                                >  1:684323/1‑143 (MQ=255)            gTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAAt                                                                                                                                <  1:498984/143‑1 (MQ=255)               ctcCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAg                                                                                                                             >  1:1331673/1‑143 (MQ=255)               ctcCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAAACAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATGCTCAACTGGTTATGCCCATGCTATGGGTGAATAGAACGGAGGTGCGACTAAg                                                                                                                             >  1:243823/1‑143 (MQ=255)                  cGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCgg                                                                                                                          <  2:477116/143‑1 (MQ=255)                  cGCCAGGATTGATTTTCGTAGTAGTGGCGGTCCCATGAACCAGCTGGATATCTTTTTCCAACTTGGTGCGAATTCCGATGTCTGCCTAGTCCACATTTTATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCgg                                                                                                                          <  1:1360105/143‑1 (MQ=255)                  cGCCAGGATTGAGTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCgg                                                                                                                          <  1:645114/143‑1 (MQ=255)                   gCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACAGCATCAACTGTCTCACCATACTCAACAGTTGCTGCCAATGCTATGGGTGAATATCAGGAAGGTGCGACTAAGCggg                                                                                                                         >  1:542531/1‑143 (MQ=255)                       ggATTGATTTTCGTATTAGTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCATCTTTCTTACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGaaa                                                                                                                     <  2:1027073/143‑1 (MQ=255)                         attgattTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGAGAATAAAAGGAAGGTGGGAATAAACGGGGAAAtg                                                                                                                   >  2:78060/1‑142 (MQ=255)                         attgattTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGCTGATGCCAATGCTATGGGTGAATACAAGGACGGTGTGAATACGCGGGGAAAta                                                                                                                   >  2:701571/1‑142 (MQ=255)                          ttgattTTCGTATTATTCGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACTGGTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAttc                                                                                                                  <  2:496245/143‑1 (MQ=255)                          gtgattTTCGCTCTACTGGCTGTCCCATAACCCATCTGTATCTCTTTTTCCCGGACAACTCCATCATTTGGTTTACCATACGCGACAGTTGATGCCAATGCTATGGTTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAttc                                                                                                                  <  2:1184002/142‑1 (MQ=255)                            gattTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAttctt                                                                                                                <  2:574372/143‑1 (MQ=255)                             attTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAttcttc                                                                                                               >  1:1237088/1‑143 (MQ=255)                               tttCGTAGTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCGTGACAAGACCATCAACTGTCTTACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAttcttcgc                                                                                                             <  2:230682/143‑3 (MQ=255)                                                tCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCCTACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcattt                                                                                            <  1:232737/143‑1 (MQ=255)                                                tCCCATAAACCAACTGGATATCTTTTTCCAGGACAACGCCATCCGGTGGCTCACCATACTCCAAAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcattt                                                                                            <  1:571691/143‑1 (MQ=37)                                                  ccATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttca                                                                                          >  1:547638/1‑143 (MQ=255)                                                  ccATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAGTCTTCTCCGCTGACTCAGtcatttca                                                                                          >  2:1008057/1‑143 (MQ=255)                                                   cATAAACCAGCTGGATCTCTTTCTCCAGGACAACACCATTAACTGTCTCACAACACTCCACAGCTGATGCCAATGCTATGTGTGAATATAAGGAAGGTGCGTATAAGCGGGTAAATTCTTCTCGGCTGACTCAGtcatttcat                                                                                         <  2:24926/143‑1 (MQ=25)                                                   cATAAACCAGCTGGATATCTTTTTCCAGGACGACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGACTAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatctcct                                                                                         >  1:1319741/1‑141 (MQ=255)                                                   cATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCGATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACCCAGtcatttcat                                                                                         >  2:1344406/1‑143 (MQ=255)                                                              tgtatatCTTTTTCCGGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAGTGCGATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGtt                                                                              <  2:1294808/140‑1 (MQ=255)                                                                gATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAGTCTTCTCGGCTGACACAGTCATTTCATTTATTCATGtttt                                                                            >  2:538803/1‑142 (MQ=255)                                                                 atatCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGa                                                                           <  1:924998/143‑1 (MQ=255)                                                                 atagCTTTGTCCAGGACACCACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGa                                                                           <  1:429617/143‑1 (MQ=255)                                                                    tCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATAGGTGAATATAAGGACGGTGCGAATAAGCGGGGAAACTCTTCTCGGATGACTCAGTCATTTCCTTTCTTCCTGTTTGAAcc                                                                        >  2:1028769/1‑143 (MQ=37)                                                                     cTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCCTGTTTGACCCg                                                                       >  2:1107355/1‑143 (MQ=255)                                                                      tttttCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGa                                                                      >  1:1330448/1‑143 (MQ=255)                                                                         ttCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttt                                                                   >  2:54261/1‑143 (MQ=255)                                                                            cAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtttttt                                                                <  1:605070/143‑1 (MQ=255)                                                                            cAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAATTCGTCATGTTTTAGCTGAtttttt                                                                >  2:468114/1‑143 (MQ=255)                                                                              ggACGACACCATCGACTGTCTCACCATCCTCAACAGTTGATGCCAACGCTATGGGTGACTATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtct                                                              <  2:1331283/143‑1 (MQ=21)                                                                                 caacaCCCGCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTccc                                                           <  1:982525/143‑1 (MQ=255)                                                                                  aacaCCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAGTTTTTCTCCCg                                                          >  2:1245170/1‑143 (MQ=255)                                                                                   acacCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCACAGATTCATGTTTGAGCCGATTCTTTCTCCCGt                                                         >  2:808113/1‑143 (MQ=25)                                                                                     acCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGACTTTTTCTCCCGTaa                                                       >  2:993307/1‑143 (MQ=255)                                                                                        aTCAACTGTCTCACCATACTCAACAGTTGATGCCAATGATATGGGCGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCGCGGCTGCCTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATg                                                    >  1:187093/1‑143 (MQ=255)                                                                                         tcatctcgtgcACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGc                                                   <  2:802377/133‑1 (MQ=255)                                                                                           aaCTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTACCTTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCt                                                 >  1:766946/1‑143 (MQ=255)                                                                                           aaCTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAGAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCCTGTTTGAGCCGATTTTTTCTCCCGTACATGCCt                                                 >  1:160576/1‑143 (MQ=255)                                                                                            accgTCTCACCATCCTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGTATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCtt                                                <  2:432807/140‑1 (MQ=255)                                                                                            aCTCTCTCACCATACTCAACAGTTGATGCCCATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCCGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCtt                                                <  1:506017/143‑1 (MQ=255)                                                                                              tGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATACGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGa                                              >  2:768993/1‑143 (MQ=255)                                                                                               ggctgactaTACTCAGCAGTGGATGCCCGTGCTATGGGTGAATATCCGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGaa                                             <  2:812011/135‑1 (MQ=14)                                                                                                tctcACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAAt                                            >  1:1295985/1‑143 (MQ=255)                                                                                                tctcACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATGTTTTCTCCCATAAATGCCTTGAAt                                            >  2:1050950/1‑143 (MQ=255)                                                                                                tctcACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACCCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTACATGCCTTGAAt                                            >  1:628832/1‑143 (MQ=255)                                                                                                    gccATGCTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTCCGAATAAGCGGGGAAATTCTTCTCGGCTGTCTCAGCCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGc                                        <  2:1054562/142‑1 (MQ=255)                                                                                                     ccATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGcc                                       >  1:1044473/1‑143 (MQ=255)                                                                                                       aTACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTGGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCCTAGATGTCGTGTATcgggcgc                                     >  2:794627/1‑137 (MQ=18)                                                                                                        tACTCAACAGTTGATGCCAATGCTCTGGGTGCATATAAGGAAGGTGCGAATAAGCGGAGACCTCCTTCGCGGCTGACTCAGTCATTTCACTGCTGCATGTTTGAGCCGATCTTTTCGCCCCTACATGACTTGatctagcccat                                    >  2:302459/1‑133 (MQ=12)                                                                                                           tCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTGAATGCCTTGAATCAGCCTCtttc                                 >  1:1201089/1‑142 (MQ=255)                                                                                                             aaCAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTCAATGCCTTGACTCAGCCTAtttcgc                               >  2:753605/1‑140 (MQ=255)                                                                                                             aaCAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGa                               <  1:794811/143‑1 (MQ=255)                                                                                                             aaCAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCAGATTGTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGa                               >  1:433945/1‑143 (MQ=255)                                                                                                                    ggtGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttc                        <  2:356570/141‑1 (MQ=255)                                                                                                                     aTGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTTCCGTAATTGCCTCAAATCACCCTATTTCGACCGTtcct                       >  1:922746/1‑143 (MQ=17)                                                                                                                     aTGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttct                       >  1:422832/1‑143 (MQ=255)                                                                                                                       gacatggcgaTGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGGttcttc                     <  2:635909/134‑1 (MQ=255)                                                                                                                         ctctGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGc                   <  1:1131165/140‑1 (MQ=255)                                                                                                                         cAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGc                   <  1:1003315/143‑1 (MQ=255)                                                                                                                            tGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTGCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAt                <  1:1116144/143‑1 (MQ=255)                                                                                                                              cTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAttt              <  2:1237088/143‑1 (MQ=40)                                                                                                                               tATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTa             <  1:913083/143‑1 (MQ=39)                                                                                                                                 tGGGTGATTATAAGGAATGTGCGAATAAGCGGGGATATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTTAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGTCCGTTTCTTCGCCATTTAAg           <  2:313895/143‑1 (MQ=11)                                                                                                                                  gggTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAgg          >  2:939550/1‑143 (MQ=37)                                                                                                                                   ggTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGCCCGTTTCTTCGCCATTTAAGGc         >  2:253042/1‑143 (MQ=25)                                                                                                                                    gagAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACGCAGTCATTACATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCGATTTAGACCGTTTCTTCAACACTTAAGACg        >  2:465145/3‑143 (MQ=11)                                                                                                                                     tGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATAAGCCTATTTAGAACGTTTCTTCGCCACTCATGGCGt       >  2:209954/1‑143 (MQ=11)                                                                                                                                      gAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAGGTCGtt      >  1:956819/1‑143 (MQ=18)                                                                                                                                      gAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAGGGCGtt      >  2:774867/1‑143 (MQ=18)                                                                                                                                          ataAGGAAGGTGCGAATAAGCGGGGAAATACGGCTCGGCGGACTCTGTCGTTTCATTTGTTCAGGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTGGCCATTTAAGGCGTTGTcc  >  1:1007038/1‑143 (MQ=11)                                                                                                                                              |                                                                                                                                           TTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCC  >  NC_000913/2288776‑2289055

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.