| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2313545 | 3 (0.050) | 50 (0.840) | 44/278 | 0.3 | 94.4% | coding (60/2673 nt) | rcsD | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| ? | NC_000913 | 2514275 = | NA (NA) | intergenic (+33/‑54) | nupC/insL1 | nucleoside (except guanosine) transporter/IS186 transposase | |||||
GTAAGAGTCTGGAATTTCACACTGTACCCTTTATACTGCCCTATCACTTCGCGAAGTTTTAACAGGTCATAAACACGAATG‑CGTCAGAAAGAGACAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2313408‑2313545‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCC > NC_000913/2514275‑2514412 GTAAGAGTCTGGAATTTCACACTGTACCCTTTATACTGCCCTATCACTTCGCGAAGTTTTAACAGGTCATAAACACGAATG‑CGTCAGAAAGAGACAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACCATAAG > 2:205363/1‑143 TGGAATTTCACACTGTACCCTTTATACTGCCCTATCACTTCGCGAAGTTTTAACAGGTCATAAACACGACTG‑CGTCAGAAAGAGACAACGGCCACGACCCGCATTTCACTCCTACCGGGTAGCATTACCACGAGCGCgaccgc > 1:825642/1‑137 TGGAATTTCACACTGTACCCTTTATACTGCCCTATCACTTCGCGAAGTTTTAACAGGTCATAAACACGAATG‑CGTCAGAAAGAGACAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACCATAAGCGCTAACTT > 2:691982/1‑143 TGGAATTTCACACTGTACCCTTTATACTGCCCTATCACTTCGCGAAGTTTTAACAGGTCATAAACACGAATG‑CGTCAGAAAGAGACAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACCATAACCGCTAACTT > 2:957663/1‑143 ggcATTTCACACTGTACCCTTTATACTGCCCTATCACTTCGCGAAGTGTTAACAGGTCATAAACACGAATG‑CGTCAGAAAGAGACAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACCATAAGCGCTAACTTA < 1:422905/140‑1 GGAATTTCAGCCGGTGCCCTGTAGACAGCCCTAGCCCTACGCGAAGTTTTAACCGGTCATAAACACGAATG‑CGTCAGAAAGAGGCAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACCATAAGCGCTAACTTA < 1:258676/143‑1 GGAATTTCACACTGTACCCTTTATACTGCCCTATCACTTCGCGAAGTTTTAACAGGTCATAAACACGAATG‑CGTCAGAAAGAGACAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACCATAAGCGCTAACTTA > 2:945055/1‑143 TCACACTGTACCCTTTATACTGCCCTATCACTTCGCGAAGTTTTAACAGGTCATAAACACGAATG‑CGTCAGAAAGAGACAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACCATAAGCGCTAACTTAAGGGTT > 1:496373/1‑143 CACACTGTACCCTTTATACTGCCCTATCACTTCGCGAAGTTTTAACAGGTCATAAACACGAATG‑CGTCAGAAAGAGACAACGGCCACGACCCGCTTTTCACTCCTACCCGGGAGCATTACCATCAGCGCTAACTTAAGGGTTG > 1:585741/1‑143 CACTGTACCCTTTATACGGCCCTATCACTGCGCGAAGTTTTAACAGGTCATAAACACGAATG‑CGTCAGAAAGAGACAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACCATAAGCGCTAACTTAAGGGTTGTG < 1:233941/143‑1 CACCGTACCCTTTATACTGCCCTATCACTTCGCGAAGTTTTAACAGGTCATAAACACGAATG‑CGTCAGAAAGAGACAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACCATAAGCGCTAACTTAAGGGTTGTG < 2:355740/143‑1 TACCCTTTATACTGCCCTATCACTTCGCGAAGTTTTAACAGGTCATAAACACGAATG‑CGTCAGAAAGAGACAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAACATTACCATAAGCGCTAACTTAAGGGTTGTGGTAgt > 1:58897/1‑141 TTTATACTGCCCTATCACTTCGCGAAGTTTTAACAGGTCATAAACACGAATG‑CGTCAGAAAGAGACAACGGCCACGACCCGCTTTTCACTCCTACCGGCGAGCATTACCATAAGCGCTAACTTAAGGGTGGTGGTATTACGCC > 1:396130/1‑143 TACTGCCCTATCACTTCGCGAAGCTTTAACAGGCCATACACACGACTG‑CTTCAGAAAGAGACAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACCATAAGCGCTCACTTAAGGGTTGTGGTATTACGCCTGAT < 1:734344/143‑1 TGCCCTATCACTTCGCGAAGTTTTAACAGGTCATAAACACGAATG‑CGTCAGAAAGAGACAACGGCCACGAGCCGGTTTTCACTCCTACCGGGGAGCATTACCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCGGATATG > 2:787543/1‑143 GCGAAGTTTTAACAGGTCATAAACACGAATG‑CGTCAGAAAGAGACAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGGCGA > 2:236446/1‑143 CGAAGGTTTAACGGGTCACGTACCCGATTG‑CGTCAGAAAGAGACAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAT < 1:907964/143‑1 GAAGGTTTAACAGGTCATAAACACGAATG‑CGACAGAAAGAGACAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACCATAAGCGCTAAAATAAGGGTTGTGGTATTACGACTGATATGATATAACGTGCCGAag > 1:144018/1‑141 GTTTTAACAGGTCCTACACAC‑AATGTCGTCAGAAAGAGACAACGGCCACGCCCCGCTTTTCACTCCTACCGCCGAGCATTCTCATATGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAT < 1:699801/143‑1 TTTTAACAGGTCATAAACACGAATG‑CGTCAGAAAGAGACAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATT > 2:683283/1‑143 AACAGGTCATAAACACGAATG‑CGTCAGAAAGAGACAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGACGATGAATTGCTC > 2:255681/1‑143 AGGTCATAAACACGAATG‑CGTCAGAAAGAGACAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA < 2:623817/143‑1 cgtgATAAGCACGAATG‑CGTCAGAAAGAGAGAACGGCCACGACCCGCTTGTGACTCCTACCGGGGATCATTACCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAC < 1:701075/139‑1 GTCATAAACACGAATG‑CGTCAGAAAGAGACAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACG > 1:419248/1‑143 TCATAAACACGAATG‑CGTCAGAAAGAGACAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACCATGAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGCGGAATTACTCTCACGA > 1:120211/1‑143 TAAACAGGAATG‑CGTCAGAAAGAGACAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAA < 2:620641/143‑1 TAAACACGAATG‑CGTCAGAAAGAGACAACGGCCACGCCCCGCTTTTCACTCCTACCGGGGAGCATTACCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAA < 2:35664/143‑1 TAAACACGAATG‑CGTCAGAAAGAGACAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGCTACGATTTAACGTGCCGGTGAATTACTCTCCCGATAA > 2:51934/1‑143 ACGAATG‑CGTCAGAAAGAGACAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGT > 1:1040553/1‑143 GAATG‑CGTCAGAAAGAGACAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGGTTTGATTTACTGTGCCGATGGATTACTCTCCCGATActttgtca > 2:444887/1‑135 CAGAAAGAGACAACGGCCACGACCCGCTTGTCACTCCTACCGGGGAGCATTACCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCT < 1:709326/143‑1 AGAAAGAGACAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGCTTTAACGTGCCGATGAGTGACTCTCACGATAAGTGGTCAGCAATTGTG > 1:712266/1‑143 gaaagactcccatGCCATGACCCGCTTTGCACTGCTACCGTGTAGCATTACCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTTGTCAGCAATTCTGG < 2:389695/130‑1 AAAGAGACAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC > 1:140773/1‑143 AAAGACACAACGGCCACTACCCGCTCTGCACTGCTCCCGGGGAGCATTACCATACGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC < 1:370419/143‑1 AGACAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCAT > 2:369780/1‑143 ACAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCAGTACCATAAGCGCTAACTGAAGGGTTGGGGTATGACGCCTGATAGGATTTAACGGGCCGGTGGATGACTCCCACGATAACAGGTCAGCAATTCTGGGCCAact > 1:290156/1‑140 CAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATT < 2:461781/143‑1 AACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACCATAAGCGCTACCTTAAGGGTTGTGGTATTACGCCTGATATGATTTCACGTGCCGATGAATTACTCTCACGATAATCCATCAGCAATTCTGACCCATATTG > 1:943427/1‑143 ACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGG < 2:126476/143‑1 CACGACCCGCTTTTCACTCCTACCGGGGAGCATTACCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATGGCTGGGGTGTAATTCTGGCCCACAGTGGTAgtc > 2:441660/1‑140 CCCGCTGTTCACTCCTACCGGGGAGCATTACCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAA < 2:951547/143‑1 CCGCTTTTCACTCCTACCGGGGAGCATTACCATAAGAGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTAAACGTGCCGATGAATTACTCTCACGATAACGGGTCAGCAATGCTGGCCCATATCGGTGAGCCCGAAG > 1:870418/1‑143 TCCTACCGGGGAGCATTACCATAAGCGCTAACTAAAGGGTTGTGGCATCACGCCTGATAAGATGTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACT > 2:1038828/1‑143 TACCGGGAAGCATTACCATGAGCTATAATTTAAGGTGGGGGGTATTACGCCTCATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCG < 2:537653/143‑1 ACCGGGGAGCATTACCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGG > 2:809330/1‑143 CGGGGAGCATTACCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCA < 2:496373/143‑1 TTACCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCC < 1:369780/143‑1 ACCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTA > 1:947100/1‑65 ACCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTA < 2:947100/65‑1 GTAAGAGTCTGGAATTTCACACTGTACCCTTTATACTGCCCTATCACTTCGCGAAGTTTTAACAGGTCATAAACACGAATG‑CGTCAGAAAGAGACAACGGCCACGACCCGCTTTTCACTCCTACCGGGGAGCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2313408‑2313545‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCC > NC_000913/2514275‑2514412 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |