Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	4,001,644	Δ5 bp	coding (220‑224/951 nt)	corA →	magnesium/nickel/cobalt transporter

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	4001644	4001648	5	52 [0]	[0] 52	corA	magnesium/nickel/cobalt transporter

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4001643	0 (0.000)	52 (0.960)	47/282	0.1	100%	coding (219/951 nt)	corA	magnesium/nickel/cobalt transporter
	?	NC_000913	4001649 =	0 (0.000)					coding (225/951 nt)	corA	magnesium/nickel/cobalt transporter

TTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATATTCACTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCGTGCCCGTAGC  >  NC_000913/4001510‑4001787                                                                                                                                            |                                                                                                                                           atggagtggtgttgtcgaccgggacgccgacgagcgactgcgcgtacaatctgaacttggccagggcctggcaacccgcccggagctggaaggcatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTcc                                                                                                                                         <  2:423330‑M2/4‑1 (MQ=255)  tggattgatcttgtcgaaccggacgacgacgagcggctgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCct                                                                                                                                        <  2:894151‑M2/5‑1 (MQ=255)     attgatcttgtcgaaccggacgacgacgagcgactgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCcttct                                                                                                                                     >  2:463665‑M2/136‑143 (MQ=255)      ttgatcttgtcgaaccggacgacgacgagcgactgcgcgtacaatctgaacttggccagagcctggcaacccgaccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCcttctt                                                                                                                                    >  2:548019‑M2/135‑143 (MQ=255)       tgagcgtgtcgacccggacggcgacgagcgactgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactgtaagacatcgaagcatcggcacgtttctgtgaagacgacgacggcctgcatCTCcttcttc                                                                                                                                   <  1:238671‑M2/10‑1 (MQ=255)          tcttgtcgaaccggacgacgacgagcgactgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCcttcttcttc                                                                                                                                <  1:607505‑M2/13‑1 (MQ=255)          tcttgtcgaaccggacgacgacgagcgactgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCcttcttcctc                                                                                                                                >  2:471723‑M2/131‑143 (MQ=255)           cttgtcgaaccggacgacgacgagcgactgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCcttcttcttct                                                                                                                               >  2:487556‑M2/130‑143 (MQ=255)             tgtcgaaccggacgacgacgagcgactgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCttt                                                                                                                             <  2:160588‑M2/16‑1 (MQ=255)              gtcgaaccggacgacgacgagcgactgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgcagacgacgacggcctgcatCTCCTTCTTCTTCTTTg                                                                                                                            >  2:632532‑M2/127‑143 (MQ=255)                cgagccggacgacgacgagcgactgcgcgtacaatctgaagttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGaa                                                                                                                          <  1:441359‑M2/19‑1 (MQ=255)                   accggacgacgacgagcgactgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaacgggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGAt                                                                                                                       <  2:235128‑M2/22‑1 (MQ=255)                    ccggacgacgacgagcgactgcgcgtacaatctgaacttggccagcgcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgtagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATg                                                                                                                      <  2:40242‑M2/23‑1 (MQ=255)                       gacgacgacgagcgactgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcattgggacgtctatctgaagacgacgacggcctgcaaCCCCTGCTTCTTCTTTGAAGATGCgg                                                                                                                   >  1:717249‑M2/118‑143 (MQ=255)                          gacgacgcgcgtctgcccgtacaatctgaacttggccagagcctggcatcccgcccggtactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAg                                                                                                                <  1:247164‑M2/29‑1 (MQ=255)                           acaacgatcgactgccaagacaatctgaacttggccagagcctggcaacccgcccgtaactggaagacatcgatgcatcgccacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGa                                                                                                               <  1:133185‑M2/30‑1 (MQ=255)                             gacgagcgactgcgcgtacaatctgagcttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATc                                                                                                             <  2:699847‑M2/32‑1 (MQ=255)                               cgagcgcctgcgcgtacaatctgaactttgccagagcctggcaacccgctcggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCAc                                                                                                           <  1:765455‑M2/34‑1 (MQ=255)                                     agtgggggtacgatctgagctgggcccgagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGt                                                                                                     <  1:300129‑M2/40‑1 (MQ=255)                                     actgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagaccacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGt                                                                                                     <  2:497735‑M2/40‑1 (MQ=255)                                         cgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTACCt                                                                                                 >  2:376182‑M2/100‑143 (MQ=255)                                              acaatctgcacctgcctatagcctgggaacccgccctgaactggaagacatagaagcttcggctcgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACt                                                                                            <  1:333897‑M2/49‑1 (MQ=255)                                                 ttctgagcttggcgagggcctggcatcccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACtgtg                                                                                         <  1:778516‑M2/52‑1 (MQ=255)                                                 atctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACtgtg                                                                                         >  2:831616‑M2/92‑143 (MQ=255)                                                 atctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGCATCTCCACtgtg                                                                                         >  1:690515‑M2/92‑143 (MQ=255)                                                     gaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCAt                                                                                     >  2:242470‑M2/88‑143 (MQ=255)                                                          tggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatATCCTTCTTCTTCTTTAAAGATGCGGAAGATCACGACGGAAACTCCACAGTGAAATTTAcc                                                                                >  2:766388‑M2/83‑143 (MQ=255)                                                            gccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCGCTGTGGCATTTACCAt                                                                              >  1:659199‑M2/81‑143 (MQ=255)                                                            gccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGAGCACGCCCGTAACGCCACCGTGGCATTTACCAt                                                                              >  1:661672‑M2/81‑143 (MQ=255)                                                             ccagggcctggcaccccgcccggaacgggaggacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATc                                                                             <  1:587884‑M2/64‑1 (MQ=255)                                                             ccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCatg                                                                             >  2:843296‑M2/80‑142 (MQ=255)                                                              cagagcctgtctactctccctgaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATcc                                                                            <  2:61353‑M2/65‑1 (MQ=255)                                                              cagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGATGATCACGCCGGTATCTCCTCTGTGTCATTTCCCAtca                                                                            >  2:101703‑M2/79‑142 (MQ=255)                                                                   cctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGAt                                                                       <  2:191772‑M2/70‑1 (MQ=255)                                                                   cctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGAGCACGCCGGTAACTCCGCTGTGGCCCCTCCCatccgcgtt                                                                       >  2:252405‑M2/74‑139 (MQ=255)                                                                            ccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGCCTg                                                              >  1:942220‑M2/65‑143 (MQ=255)                                                                                      ctggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCTTGATGGTCGTCTGTTTACTCTgc                                                    <  1:662608‑M2/89‑1 (MQ=255)                                                                                      ctggaagacatagaagtctcggcacgtttctttgaagacgacgactgcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACTATCCGTGATGGTCGTCTGTTTACTCTgc                                                    <  1:95372‑M2/89‑1 (MQ=255)                                                                                                  gaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAAc                                        <  1:140046‑M2/101‑1 (MQ=255)                                                                                                  gaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAAc                                        <  2:302003‑M2/101‑1 (MQ=255)                                                                                                      catcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGCGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGcc                                    >  2:274788‑M2/39‑143 (MQ=255)                                                                                                               gtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTCCTCTGCGTGAGCGTGAACTACCCgcttttag                           >  2:881526‑M2/30‑141 (MQ=255)                                                                                                                tttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGt                          <  2:663484‑M2/115‑1 (MQ=255)                                                                                                                 ttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGAAGATAACTGCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTCTACTCTGCGTGAGCGTGCGCTGCacgcttttagca                         >  1:157971‑M2/28‑139 (MQ=255)                                                                                                                      ttaagacaatgtcggcctgcatCTCCGTATTCTTCTGTGAAGAGGCGGAAGAGCACGCCGGTAACGCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTTCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTAt                    <  2:100747‑M2/121‑1 (MQ=255)                                                                                                                        aagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTACACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCg                  <  1:487556‑M2/123‑1 (MQ=255)                                                                                                                          gacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTa                >  2:803708‑M2/19‑143 (MQ=255)                                                                                                                           gcggtggcggcatgcatCTCTTTCTCCTTCTTGGGAGATGCGGAAGATCACGCCGGTAACTCCACTGTCGCAGTTACCATCCGTCACGGTCGTCCGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTAt               <  1:361591‑M2/126‑1 (MQ=255)                                                                                                                               cgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTCCGTCTGTATCGTATGCGt           >  2:350812‑M2/14‑143 (MQ=255)                                                                                                                                   ggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCGTGccc       <  1:480574‑M2/134‑1 (MQ=255)                                                                                                                                     cctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCGTGCCCGt     >  2:511310‑M2/8‑143 (MQ=255)                                                                                                                                        gcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTCACCTGCCCGCTTCTCGTCTGTATCGTCTGCTTgcccgacgc  >  2:289749‑M2/5‑139 (MQ=255)                                                                                                                                            |                                                                                                                                           TTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATATTCACTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCGTGCCCGTAGC  >  NC_000913/4001510‑4001787

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑