| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 780554 = | 62 (1.150) | 10 (0.190) +GAAG |
4/274 | 7.5 | 18.8% | noncoding (1/76 nt) | lysT | tRNA‑Lys |
| ? | NC_000913 | = 2521004 | 27 (0.500) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTT > NC_000913/2520868‑2521144 | ttCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAactcct > 2:474171/1‑143 (MQ=255) tcgttAGAAACGGCGTCGACTCGCTTCGAGCTGTCCCTATGGTGCGCCTCCACACAGCGGGGGTGAGTAGCGCCGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGTCGGTTCGATCCCGTCATCACCCACCAACTACtt < 1:375486/140‑1 (MQ=17) tttAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCGACCAACTACTTTa > 2:16387/1‑143 (MQ=255) gACTCGTTTTGAACTCTCCCTATAATGCGACGCCACACAGCGGGGGTGATTAGCTCGGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCgt < 1:418526/143‑1 (MQ=255) cTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCgtgt < 1:280617/143‑1 (MQ=255) gatcctcCCTATAATGCGACCCCACCCAGCGGGGGTGATTAGCGCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGaaa < 2:151145/139‑1 (MQ=255) aaCCCTCCCTACAATGCCACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGaaa < 2:620721/143‑1 (MQ=255) cggtcCCTACAGTGCGCCTCCACACAGGGGGGGTGATTAGCTCAGCTGGGAGAGCCCCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAAtt < 2:917473/140‑1 (MQ=21) tctcCCTATAATGCGACTCCACACAGCGGGGGTGATGAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCTACTTTCTTTAGTCCCGGCCGTGTAGCAGGAAACTg > 2:361914/1‑143 (MQ=21) gctcCCTATGCTGCGACTCCACACAGCGCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTg < 1:650699/142‑1 (MQ=255) ctcCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCGCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTga < 2:49691/143‑1 (MQ=255) cTCCGCCCAGCGGGGGTGATTAGCGCAGCTGGGAGAGCCCCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAg < 1:907761/143‑1 (MQ=255) cTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCTACTTTATGGAGTCTCCCCCGTGTAGCCAGAAATCGAGAAGTggccgataag > 2:387612/1‑135 (MQ=18) cacacaGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTCCTTTATGTAGTCTCCGCCGTGTAGCAAGCAATTGAGAAGTGGGTGATTAGCTc > 2:161841/1‑143 (MQ=255) acaGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGc > 2:337191/1‑143 (MQ=255) cggcgaccaccCTGACTAGGAGTGGGCCGTCGGATCAATCTCGTCATAACCTACGATCTACGTTGTGTATTTTCCGCCGTGTAGCGACAACTCGCGGCGTGGGTGATGAGCTCAGCTGGGAGAGCACCTCCCTTACAaggagg < 1:79945/138‑1 (MQ=9) ttACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGtt > 2:867070/1‑143 (MQ=255) ttACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGtt > 2:531750/1‑143 (MQ=255) tgctaggattgggTCGGCGGTTCGATCCCGTCATCACCCGCCTACTACTGTATGTAGTCTCCGCCGTGTAGCAACAAATTGAGATGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTc < 1:266234/133‑1 (MQ=25) gaggGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTgg > 1:898484/1‑83 (MQ=255) gaggGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTgg < 2:898484/83‑1 (MQ=255) aTCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGCACGATCCCGTCAGCACCCACCACtct > 1:298286/1‑141 (MQ=255) tcatccCCCGCCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGcc < 2:927969/143‑1 (MQ=255) cacccaccAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGGCGGCGGTTCGATCCCGCCGTCACCCACCACTTTCCCGCCTGcc > 1:575614/1‑142 (MQ=21) ccaccaACTACTTTATGTAGTCTCCGCCGTGTAGCAAGCAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGCCGGCGGTTCGATCCCGTCATCACCCACCACACTCTCGCCGGcgata > 1:604351/1‑139 (MQ=21) caccaACTACTTTATGTAGTCTCCGCCGGGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGGCGGCGGTTCGATCCCGCCAGCACCCCCCACCTTCGCGCCGGCTaagt > 2:371206/1‑141 (MQ=21) ccaACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTCGTCGCCAGCGaagtgt > 1:275732/1‑139 (MQ=255) | TTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTT > NC_000913/2520868‑2521144 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |