New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	781369 =	41 (0.760)	11 (0.210) +GAAG	5/274	6.9	25.0%	noncoding (1/76 nt)	lysZ	tRNA‑Lys
	?	NC_000913	= 2521004	27 (0.500)					noncoding (76/76 nt)	valU	tRNA‑Val
Rejected: Coverage evenness skew score above cutoff.

AACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAAT‑TGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAA  >  NC_000913/781228‑781505                                                                                                                                              |                                                                                                                                          aaCATCTATCTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATgg                                                                                                                                          <  1:46605/143‑1 (MQ=255)    aTCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGCAGAAATCCTCCACGTAACACCCGGATggggc                                                                                                                                       >  1:184771/1‑141 (MQ=21)         aCTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCGCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGttcg                                                                                                                                  >  2:584262/1‑141 (MQ=255)          cTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCTAGTCATTCTGCACGACCCACCAAGCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGc                                                                                                                                 <  2:855198/143‑1 (MQ=255)           tCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGCCCCACCAATCTTAAAGATTGGCCCCGAGTAAACATCCTCCAGGTACCACCCGTATGGGTCGTTAGCt                                                                                                                                >  1:143087/1‑143 (MQ=25)                 gtgaaGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTg                                                                                                                          <  2:745318/140‑1 (MQ=255)                       cgggAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTagag                                                                                                                    <  2:236837/140‑1 (MQ=255)                            aGGAGAACGTGGCGCCAGGAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGCCCCACCAATCGTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGtt                                                                                                               <  2:326242/143‑1 (MQ=38)                              gATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGa                                                                                                             <  1:943862/143‑1 (MQ=255)                                tAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACt                                                                                                           >  2:160753/1‑143 (MQ=255)                                 gccgttgctggcgCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCCGTTGGTGGAGCACTTGACtt                                                                                                          >  2:152602/13‑143 (MQ=37)                                  ccgttgctggcgCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACttt                                                                                                         >  2:547730/12‑143 (MQ=255)                                    gtggctccggCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTa                                                                                                       <  1:754683/134‑1 (MQ=255)                                    gTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTa                                                                                                       <  2:720854/143‑1 (MQ=255)                                      tggtcccgctaCGTCCCGTTGGTCCTGCGGACCGACTCATCCGGCACGACCCCCCAATCTCAACGATTGGCTCTGAGTATAAATCTTGCAAGCACCCCCCATTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAAt                                                                                                     <  1:760819/133‑1 (MQ=12)                                         gcCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTCGGTAGAGCAGTTGACtttttaccac                                                                                                  >  2:302110/1‑137 (MQ=255)                                                    cccGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTCGGTAGAGCAGTTGACTTTTGATCAAT‑TGGTCGAAgc                                                                                      >  2:164942/1‑142 (MQ=255)                                                      ggTAGGGCGAGCGAAGCGAGTCATCCTGCACGACGCACCAATCTTAAAGAGTGGCCCCGAGTAAAAATCTTTCAGTTAACCTCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAAT‑TGGTCGCAGGtt                                                                                    <  2:459778/142‑1 (MQ=37)                                                       cgggcgtgggcgcagcgaGGCACCGTGCACGGGCCACCCATCGTAAAGATGGGCCCCGAGTAAAAATCTTCCAGTGACCACCCGTAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAAT‑TGGTCGCAGGtcc                                                                                   <  2:845499/134‑3 (MQ=18)                                                                   aagcgaGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAAT‑TGGTCGCAGGTTCGAATCCTGCACg                                                                       >  1:125038/1‑143 (MQ=255)                                                                              ccTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAAT‑TGGTCGCAGGTTCGGATCCTGCACGACCCACCAGtt                                                            >  2:248341/1‑143 (MQ=255)                                                                                     gACCCACCACGCTCAAAGATGGGCCCCCAGGAAACACCTTTCAGATAACACCCGTATGGGTCGTTACCTCAGCTGGTAGAGCAGTTCACTTTTAATCAAT‑TGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAggt                                                     <  2:887430/143‑1 (MQ=18)                                                                                         caccaATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCTGTTGGTAGCGCAGGGGAATTTT‑GTCAATGACGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAcgtgcgc                                                 >  1:424654/1‑140 (MQ=21)                                                                                          accaATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAAC‑TGGACGCAGGCTCGAATCCTGCACGAGCCACCAGCTTAGAggtgctca                                                >  1:252739/1‑139 (MQ=21)                                                                                                cTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGCAACACCCGTATGAGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAAT‑TGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTa                                          <  2:320187/143‑1 (MQ=255)                                                                                                 ttAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAAT‑TGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAGGGTGGTTACTGGTag                                         >  2:108801/1‑143 (MQ=255)                                                                                                    aggaggggCCCGGAGTATCGATCTTTCCGGCACCCCCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAAT‑TGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAgaga                                      <  1:785132/137‑1 (MQ=18)                                                                                                    aaGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAAT‑TGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGATGGTTACTGGtggggg                                      >  2:956163/1‑138 (MQ=255)                                                                                                           gCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAAT‑TGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGaa                               <  2:125038/143‑1 (MQ=255)                                                                                                           gCCCCGAGTAAAAATCTGTCAGGTAACCCCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAAT‑TGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGaa                               <  2:955249/143‑1 (MQ=255)                                                                                                            ccccGAGTCAAACTCTTTCCGGTAACCCCCGTTTGGGTCGTTAGCGCAGTTGGTAGAGCAGTTGACTTTTAATCAAT‑TGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAg                              <  1:794547/143‑1 (MQ=21)                                                                                                             cccGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAAT‑TGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAgg                             >  2:555572/1‑143 (MQ=255)                                                                                                             cccGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAAT‑TGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAgg                             >  1:95010/1‑143 (MQ=255)                                                                                                                    aaaaaTCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAAT‑TGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGCACGTGAAGGATAACGt                      >  2:777632/1‑143 (MQ=255)                                                                                                                          cTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAAT‑Tg                                                                                              >  1:684133/1‑65 (MQ=255)                                                                                                                          cTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAAT‑Tg                                                                                              <  2:684133/65‑1 (MQ=255)                                                                                                                           tttCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAAT‑TGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGAAGCTCACTGACAGCGCACGTCAAGGATCAccgagagtta               >  1:734685/1‑134 (MQ=17)                                                                                                                           cggcagttaccccccGTTCGGGTCGTTAGCTCAGCTGCTAGAGCTGTTGACTTTTAATCAAT‑TGGTCGCAGGTTCGAAGCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTa               <  1:926743/131‑1 (MQ=18)                                                                                                                                ggTAACACCCGTAGGGTGCGTTAGCTCAGTTGGTAAAGGAGTTGACTTTTAATCCAT‑TGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAAc          <  2:648634/143‑1 (MQ=25)                                                                                                                                  tAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAAT‑TGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTGCTGGTAGAGAGCGAGAAGGATAACGTTGAGGTGGCGACgg        >  2:249401/1‑143 (MQ=18)                                                                                                                                        ccGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAAT‑TGGTCGCAGGTTCGAATCCTGCACTACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGaa  >  1:329837/1‑143 (MQ=255)                                                                                                                                              |                                                                                                                                          AACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAAT‑TGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAA  >  NC_000913/781228‑781505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.