| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1962618 = | 21 (0.420) | 27 (0.550) | 24/284 | 1.4 | 56.2% | coding (355/393 nt) | flhE | proton seal during flagellar secretion |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
CTTGTGTTCGCAATCTCGTTGTGTCGAATTAGAGGGGCAGAGCGGAACCACCGTGGCCTTTTCCGGTATAGCGGCAGCAGAACCGTTGCGATTTATCTGGGAAGTGCCAGGCGGTGGGCGGTTAATTCCACCGCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1962754‑1962618‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTT < NC_000913/2290113‑2289976 CTTGTGTTCGCAATCTCGTTGTGTCGAATTAGAGGGGCAGAGCGGAACCACCGTGGCCTTTTCCGGTATAGCGGCAGCAGAACCGTTGCGATTTATCTGGGAAGTGCCAGGCGGTGGGCGGTTAATTCCACCGCTAAGGAAGG > 1:840017/1‑143CTTGTGTTCGCAATCTCGTTGTGTCGAATTAGAGGGGCAGAGCGGAACCACCGTGGCCTTTTACGGTATAGCGGCAGCAGAACCGTTGCGATTTATCTGGGAAGTACCAGGCAGTGGGCGGTTAATTCCACAGCTAAGGCAGG > 2:844002/1‑143 GTGTTCGCAATCTCGTTGTGTCGAATTAGAGGGGCAGAGCGGAACCACCGTGGCCTTTTCCGGTATAGCGGCAGCAGAACCGTTGCGATTTATCTGGGAAGTGCCAGGCGGTGGGCGGTTAATTCCACCGCTAAGGAAGGTGC > 1:619359/1‑143 TCGCAATCTCGTTGTGTCGAATTAGAGGGGCAGAGCGAAACCACCGTGGCCTTTTCCGGTATAGCGGCAGCAGAACCGTTGCGATTTATCGGGGAAGTGCCAGGCGGTGGGCGGTTAATTCCACCGCTAGGGAAGGTGCGAAC > 1:255568/1‑143 CAATCTCGTTGGGTCGAATTAGAGGCGCAGAGCGGAACCACCGTGGCCGTTTCCGGTATAGCGGCAGCAGAACCGTTGCGATTTATCTGGGAAGTGCCAGGCGGTGGGCGGTTAATTCCACCGCTAAGGAAGGTGCGAACAAG < 1:449769/143‑1 gCTCGGTGGGCCGAATGAGAGGGGCAGAGCGGAGCGACCGAGGCCGGTGCCGGTATAGGGGCAGCAGAACCGTTGCGATGTATCTGGGAAGGGCCAGGCGGTGGGCGGTTAATTCCACCGCTAAGGAAGGTGCGAACAAGTCC < 1:87589/142‑1 GTTGTGTCGAATTAGAGGGGCAGAGCGGAACCACCGTGGCCTTTTCCGGTATAGCGGCAGCAGAACCGTTGCGATTTATCTGGGAAGTGCCAGGCGGTGGGCGGTTAATTCCACCGCTAAGGAAGGTGCGAACAAGTCCCTGA < 1:550648/143‑1 TCGAATTAGAGGGGCAGAGCGGAACCACCGTGGCCTTTTGCGGTAGAGCGGCAGCAGAACCGTTGCGATTTATCTGGGAAGTGCCAGGCGGTGGGCGGTTAATTCCACCGCTAAGGAAGGTGCGAACAGGTCCCTGATATGAG > 1:172836/1‑143 AATGAGAGGGGCAGAGCGGAACCACCGTGGCCTTTTCCGGTATAGCGGCAGCAGAACCGTTGCGATTTATCTGGGAAGTGCCAGGCGGTGGGCGGTTAATTCCACCGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATC < 2:504004/143‑1 AGGGGCAGAGCGGAACCACCGTGGCCTTTTCCGGTATAGCGGCAGCAGAACCGTTGCGATTTGTGTGGCGGCCCCCAATTGGTGGGCGTCTAATTCCACCGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTT < 1:420138/143‑1 TGGCCTTTTCCGGTATAGCGGCAGCAGAACCGTTGCGATTTATCTGGGAAGTGCCAGGCGGTGGGCGGTTAATTCCACCGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACA > 1:339397/1‑143 CTTTTCCGGTATAGCGGCAGCAGAACCGTTGCGATTTATCTGGGAAGTGCCAGGCGGTGGGCGGTTAATTCCACCGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT > 1:891594/1‑143 TTTTCCGGTATAGCGGCAGCAGAACCGTTGCGATTTATCTGGGAAGTGCCAGGCGGTGGGCGGTTAATTCCACCGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTT > 1:602655/1‑143 GTATAGCGGCAGCAGAACCGTTGCGATTTATCTGGGAAGTGCCAGGCGGTGGGCGGTTAATTCCACCGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATG > 1:262469/1‑143 GCGGCAGCAGAACCGTTGCGATTTATCTGGGAAGTGCCAGGCGGTGGGCGGTTAATTCCACCGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCA > 1:127899/1‑143 GCGGCAGCAGAACCGTTGCGATTTATCTGGGAAGTGCCAGGCGGTGGGCGGTTAATTCCACCGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCA > 1:344689/1‑143 ggGCAGAGCGGTTGCGATGTATCTGGGGAGGGCCGGGCGGTGGGCGGTGAATTCCACCGCTAAGGAAGGGGCGAACAAGGCCGTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGGTCATCATGAGTCATCAA < 2:86492/141‑1 AACCGTTGCGATTTATCTGGGAAGTGCCAGGCGGTGGGCGGTTAATTCCACCGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACC > 1:468893/1‑143 CGTTGCGATTTGTCTGGGAAGTGCCAGGCGGTGGGCGGTTAATTCCACCGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGAGCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTC < 2:653303/143‑1 TTGCGATTTATCTGGGAAGTGCCAGGCGGTGGGCGGTTAATTCCACCGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGC < 2:891594/143‑1 ATTTATCTGGGAAGTGCCAGGCGGTGGGCGGTTAATTCCACCGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACA < 1:302563/143‑1 GGGAAGTGCCAGGCGGTGGGCGGTTAATTCCACCGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTC > 2:115392/1‑143 GGAAGTGCCAGGCGGTGGGCGGTTAATTCCACCGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGGCGACAGTGAATTCA > 1:8194/1‑143 CAGGCGGTGGGCGGTTAATTCCACCGCTAAGGAAGGTGCGAACAAGTCCCTGATCTGCGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTAATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAG > 1:88904/1‑143 GCGGTTAATTCCACCGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCACAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCGGCAGTACGCGCCGTCAGA > 2:837341/1‑143 CCACCGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATGCAGCAGTAAGCGCCGTCAGACCAGAAAggt > 1:286195/1‑140 GCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCGTCAACTTACCTTCGCCGACAGTGAAGTCAGCAGTAAGAGCCCCCATACCAGCAAAGAaacga > 1:453414/1‑138 CTTGTGTTCGCAATCTCGTTGTGTCGAATTAGAGGGGCAGAGCGGAACCACCGTGGCCTTTTCCGGTATAGCGGCAGCAGAACCGTTGCGATTTATCTGGGAAGTGCCAGGCGGTGGGCGGTTAATTCCACCGCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1962754‑1962618‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTT < NC_000913/2290113‑2289976 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |