| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,909,312 | Δ774 bp | [pstA]–[pstC] | [pstA], [pstC] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3909312 | 3910085 | 774 | 25 [0] | [0] 26 | [pstA]–[pstC] | [pstA],[pstC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3909311 | 0 (0.000) | 25 (0.650) | 22/270 | 0.9 | 100% | coding (129/891 nt) | pstA | phosphate ABC transporter permease |
| ? | NC_000913 | 3910086 = | 0 (0.000) | coding (313/960 nt) | pstC | phosphate ABC transporter permease | |||||
ACATGATATTGCCGACCGGCTCCTGAAAGTAAACGGCGAACAGCGGCGCAAAGATAAACAGGCCCCACATGCCGTAAACGATACTTGGAATGGCTGCCAGCAGCTCAATGGCGATACCCAGCGGGCGTTTCAGCCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGTCCAT > NC_000913/3909945‑3910228 | cttaaccgcccgcgacccgccagagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaaccgcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccaggc < 1:349932‑M2/2‑1 (MQ=255) accagcccgccacccgccagagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCa < 1:572870‑M2/5‑1 (MQ=255) acagcccgctacccgccagagcggtcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCaa < 2:643416‑M2/6‑1 (MQ=255) cccgctacccgccagagcgttcgccagaccaccaccttccgtactgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgctgggggacatcgaaatccagaccagccagGGGCGagcac > 2:575422‑M2/134‑141 (MQ=255) cgctacccgccagagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCtcag < 1:687720‑M2/12‑1 (MQ=255) agagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccggcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAgg > 1:9040‑M2/121‑143 (MQ=255) ggggttcgccagacacccgcctgcgctattgggcggcggcgtgatgtcagtgaacagggccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGc < 1:523408‑M2/25‑1 (MQ=255) tcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATAc < 1:559093‑M2/30‑1 (MQ=255) ccagacccccaccttccgtatggggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGa < 1:466834‑M2/33‑1 (MQ=255) gaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcggtaccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGACACCGAAAc > 2:357226‑M2/108‑143 (MQ=255) accaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgcgtgatggtggacattaaaagccagctcagccagGCGCAGGCTCAGTCAGGACCAGGGCGataccgcgacg > 1:195502‑M2/107‑138 (MQ=255) ggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGACCagcagc > 1:514962‑M2/85‑143 (MQ=255) tcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGGTCAGCCGCGCGATaa > 2:73371‑M2/78‑143 (MQ=255) agcgccagcgccataccgtcgataccgcgagtgatggtggccattaaaatccagatcagccagGCGCCAGCGCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAGGccacccac > 1:246871‑M2/64‑143 (MQ=255) agcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAAc < 1:27196‑M2/80‑1 (MQ=255) gccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACACGGCGATACCGAAACTCACCGGGACGGCGCTCAGCAGCGCGATAAACGAAGCCACCAccgcc > 2:183705‑M2/61‑141 (MQ=255) cgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGAGCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGccc > 2:651714‑M2/39‑143 (MQ=255) tgatggtggacattaacatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGa < 1:193784‑M2/111‑1 (MQ=255) cgatggtgcacagtaacagccagatcagccagGCGCAAGCGCAGTCAGGAGCAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGa < 2:862‑M2/111‑1 (MQ=255) gtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGCGCAGGGCGATACCGGCCCTCACCGGGACGGCGATCAGCAGCGCGATAAGCGAAGTCACCAACGGACCGTAGATCGGCACCAGCGCCCCGTAGATATCg < 1:272435‑M2/116‑1 (MQ=255) gtggacattaaaagccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCg < 1:656913‑M2/116‑1 (MQ=255) gacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTc > 1:519480‑M2/25‑143 (MQ=255) cattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCgg > 1:362207‑M2/23‑143 (MQ=255) ttaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTg < 1:694599‑M2/123‑1 (MQ=255) ccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCa < 1:663545‑M2/130‑1 (MQ=255) gcgcAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGAACAGCAGCGCGATAAACGAAGTCACCCACGTACCGTAGATCGCCACCAGCGCCCCGAAGAAAACGTTCGGCGCCTCCCACCCGTTGGTCCAt > 2:9398/1‑143 (MQ=255) | ACATGATATTGCCGACCGGCTCCTGAAAGTAAACGGCGAACAGCGGCGCAAAGATAAACAGGCCCCACATGCCGTAAACGATACTTGGAATGGCTGCCAGCAGCTCAATGGCGATACCCAGCGGGCGTTTCAGCCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGTCCAT > NC_000913/3909945‑3910228 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |