| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 7 (0.240) | 17 (0.670) | 16/252 | 0.6 | 75.2% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 5 (0.200) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
TAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGG > NC_000913/1209483‑1209761 | tAAGCCGTGGCCAGGTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTAt < 1:32300/143‑1 (MQ=255) tccatccccactgcatgattactgattgctcaccaccaccattcatacccggtatagctatgaaaccgttgcgtcctaatgtagccgttgctgcattgagtttagctcctgctcccaaaccaaCGTTTATGAAAATGAAGaaa < 2:520523‑M2/20‑1 (MQ=255) ccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgtcgctgcatggagttttgctccttcccccaaaccaaCGTTTATCAAAATGAAGAAATACCa > 2:473945‑M2/119‑143 (MQ=255) gttATTCCTCAGCATAAAAGGCGGGGCCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACaa < 2:317617/141‑1 (MQ=255) cggacttctgtttgcgcaatagcatcaatcataaccggtatagctatgaaaccggtgcgtcctaatgtatccgttgctgcattgagttgtgctccttctcccaaaccaaCTTTTATGAAAATGAAGAAAGAACAAGCCAATgg < 2:333970‑M2/34‑1 (MQ=255) gattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGca > 1:77982‑M2/108‑143 (MQ=255) tgctcaataccaccaatcagaaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc < 1:8146‑M2/46‑1 (MQ=255) ctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagctctgctccttctcccaaaccaaCGTTTATGAAAATGAAGGAATAACAAGCAAATGGCATCATTCCTGCtt > 2:383865‑M2/96‑143 (MQ=255) tcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGATTATGAAAATGAAGAAATAACAAGCAAATGGAATCATTACTgctat > 2:284822‑M2/95‑141 (MQ=255) ccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgggg > 1:464489‑M2/86‑143 (MQ=255) ccaatcataaccggtatagctatgaaaccggtgcgtactaatgtagccgttgctgaattgagttttgctccttctcccaaaccaaCGTTTCTGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTCCTTTTACCAgggg > 1:339448‑M2/86‑143 (MQ=255) ataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAAACCTTCTTTTACAAGGGGGATTTa > 2:339264‑M2/80‑143 (MQ=255) aaccggtatagctatgaaaccggagcgtcctaatgtagccgttgctgcattgagttttgctccttctaacaatccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAGTCCTGCTGTTACCAGGGGGGTTtaag > 2:426844‑M2/78‑142 (MQ=255) aaccggtgcgtcctaatgtagccgttgctgcattaaattttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTACTATTACCAGGGGGATTTAACATACTTATTAGCtatat > 2:204931‑M2/61‑141 (MQ=255) gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGCTTTAACATGCTTATTGGcgacgaac > 2:244676/1‑136 (MQ=255) ggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACAAGGGAGAATTAACAAACTTATTGGAAATGTAagc > 1:917‑M2/57‑143 (MQ=255) gtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAGCAAGCAAATGGCATCATTCCTGCTTTTGCCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATc > 1:365831‑M2/52‑143 (MQ=255) tctgcattgagttttgctcctactcccaaaccaaCGTCTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCGGCTTTTACCAGGGGGAGTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAaca < 2:161505‑M2/109‑1 (MQ=255) tgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGAGGATTTAACATGCTTATTGGCTATGTACGCGTAGCAACAAATGACCAGAAcaca > 2:520401‑M2/33‑143 (MQ=255) aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTCATTGGCTACGTACGCGTATCAACAAATGACCAGAAcaca > 2:270386/1‑143 (MQ=255) aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATATAACATGCTTATTGGCTATGTACACGTATCAGCAAATGACCAGAAcaca > 2:429722/1‑143 (MQ=255) ttgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTCACGAGACCGAGGGAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACACGACCACAGATc > 1:119218‑M2/29‑143 (MQ=255) cccaaccaaCCGTTATGAAAATGAAGAAAGAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAACGACCAGCACACAGATCTACAACGTAATGCGCTGaa < 2:104584‑M2/134‑1 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGaa > 2:92394‑M2/10‑143 (MQ=255) cGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAgg < 1:244676/143‑1 (MQ=255) | TAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGG > NC_000913/1209483‑1209761 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |