Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,293,032 IS1 (–) +8 bp intergenic (‑110/‑488) hns ← / → tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 257908 =NA (NA)26 (0.900) 23/284 0.3 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 = 1293039 0 (0.000)intergenic (‑117/‑488) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
* ? NC_000913 1293032 =0 (0.000)41 (1.430) 35/284 0.0 100% intergenic (‑110/‑495) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
?NC_000913 = 1979270 NA (NA)noncoding (1/768 nt) IS1 repeat region

ATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGG  >  NC_000913/1292891‑1293171
                                                                                                                                             |                                                                                                                                           
cgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacctt                                                                                                                                            <  1:340835‑M1/2‑1 (MQ=255)
cgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaaattggcagcatcacctt                                                                                                                                            <  2:526040‑M1/2‑1 (MQ=255)
 tgttgtTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTGGTGCAATAGCCGGGAATGTAAGGAATTAAAAATTGTTCTTTAtttca                                                                                                                                           >  2:58805/1‑141 (MQ=255)
     atgtgcggccgtgcttttgccgttacgcaccacctcgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtatgttggcagcatcaccttgtgtc                                                                                                                                       >  2:288595‑M1/137‑141 (MQ=255)
      ttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTACATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCGAAATTGTTCTTTATTTTGTgccg                                                                                                                                      >  2:397334/1‑143 (MQ=255)
               ttAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgac                                                                                                                             <  1:290363‑M2/143‑10 (MQ=255)
                   ttttgccgttacgcaccaccccgtcagtagctgaacaagacggacagctgctagaaacagaagcccctggagcacctcaaaaacaccatcatacactaaatcagtaagctaacagcataaccTTGTACCgccaataaataact                                                                                                                         <  2:136342‑M1/21‑4 (MQ=255)
                     ttgcctttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCttt                                                                                                                       >  1:483195‑M1/121‑143 (MQ=255)
                     gCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaac                                                                                                                       <  2:97340‑M2/143‑16 (MQ=255)
                           cTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattg                                                                                                                 <  2:144216‑M2/143‑22 (MQ=255)
                               gcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAACAtt                                                                                                             <  2:314881‑M1/33‑1 (MQ=255)
                                  ttgtgatCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATCGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgt                                                                                                          >  2:333054‑M2/3‑115 (MQ=255)
                                        tctcCAACTTATATTGGGGTCGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatg                                                                                                    >  1:212248‑M2/1‑109 (MQ=255)
                                         gtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCcagatat                                                                                                   <  1:242356‑M1/43‑4 (MQ=255)
                                         ctcAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttcttgatagtgttttatgt                                                                                                   <  1:419726‑M2/143‑36 (MQ=255)
                                          tcAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgtt                                                                                                  <  1:82293‑M2/143‑37 (MQ=255)
                                                   tatTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtcatgactccaacttattgatagtgttttatgttcagataatg                                                                                         <  2:471659‑M2/143‑46 (MQ=255)
                                                    aacaggagcgacagctgatagaaacagaatccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCata                                                                                        >  2:67324‑M1/90‑143 (MQ=255)
                                                       ggggTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccg                                                                                     >  1:484469‑M2/1‑94 (MQ=255)
                                                       aggagggacggctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAg                                                                                     >  2:432486‑M1/87‑143 (MQ=255)
                                                         gagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGcc                                                                                   <  1:23632‑M1/59‑1 (MQ=255)
                                                            ggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTa                                                                                <  1:79715‑M1/62‑1 (MQ=255)
                                                             gacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTAt                                                                               >  1:132199‑M1/81‑143 (MQ=255)
                                                                tgttgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttg                                                                            >  2:13727‑M2/1‑85 (MQ=255)
                                                                 gctgatagaatcagatgctactggagcatctcaaaaataccattatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTac                                                                           >  1:395303‑M1/77‑143 (MQ=255)
                                                                 gctgatagaaacagaagccactggagcaactcaaaaacaccagcagacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTac                                                                           >  1:102127‑M1/77‑143 (MQ=255)
                                                                  ttgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtc                                                                          <  1:125726‑M2/143‑61 (MQ=255)
                                                                   tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATACATATCTTTTCATAAAATTAGCCAGAAAGGACGCGCCATCTCGCCCTAATTacac                                                                         <  2:148713‑M1/69‑1 (MQ=255)
                                                                    gatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACAcc                                                                        <  2:284671‑M1/70‑1 (MQ=255)
                                                                     atagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCg                                                                       >  2:309061‑M1/73‑143 (MQ=255)
                                                                     aGGTAATAATAGAGACTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatg                                                                       >  2:50075‑M2/1‑80 (MQ=255)
                                                                     aGGTAATAATAGAGAATTAAATTCAGTTGTGGAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatg                                                                       >  1:238700‑M2/1‑80 (MQ=255)
                                                                      tagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTCTTTACACCga                                                                      <  1:323447‑M1/72‑1 (MQ=255)
                                                                      tagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCga                                                                      >  1:508889‑M1/72‑143 (MQ=255)
                                                                      ggtttttatggagccttAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc                                                                      >  2:177126‑M2/8‑79 (MQ=255)
                                                                      gctaattataGAGCTTTAAATTCAGTTGTTATCTTGCTAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTTTGCCGggtaatgattccaatttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc                                                                      >  2:118065‑M2/3‑79 (MQ=255)
                                                                       agaaacagaagccactggagcacctcaaaaacaccagcatacactaaatcagtaagtgggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCgat                                                                     >  1:299442‑M1/71‑143 (MQ=255)
                                                                        gaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACcgatc                                                                    <  1:96339‑M1/74‑2 (MQ=255)
                                                                         aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCgatga                                                                   <  1:490095‑M1/75‑1 (MQ=255)
                                                                           taataGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatggctttgtcatgcagctc                                                                 >  1:370316‑M2/1‑74 (MQ=255)
                                                                             ataGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcca                                                               >  1:272368‑M2/1‑72 (MQ=255)
                                                                              gaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCg                                                              >  1:128949‑M1/64‑143 (MQ=255)
                                                                                  ccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGCTGATTTCgcagc                                                          <  2:72070‑M1/84‑1 (MQ=255)
                                                                                   cactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCgcagca                                                         >  1:55615‑M1/59‑143 (MQ=255)
                                                                                    actggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCAc                                                        <  1:53001‑M1/86‑1 (MQ=255)
                                                                                      tAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg                                                      >  1:313908‑M2/1‑63 (MQ=255)
                                                                                              ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGTAGCACGTGAGGTTaa                                              <  2:331963‑M1/96‑1 (MQ=255)
                                                                                                caaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGAGGCGGCATATAGCGCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaaaa                                            <  1:81362‑M1/98‑1 (MQ=255)
                                                                                                   aaacaccatcatacactaaatcagtaagttggcagcaccaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAaacgt                                         <  2:122782‑M1/101‑3 (MQ=255)
                                                                                                               acactaaatcagtaagttggcagcatcaccTTGTGCTGCCAATAAATATCTTTTCATATAATTATCCAGAATTTACGCTGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGt                             >  1:467242‑M1/31‑143 (MQ=255)
                                                                                                                 actaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTca                           <  1:269031‑M1/115‑1 (MQ=255)
                                                                                                                     aatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATACAATAAGCCAGAAAAGACGCGGCATTTAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACAtt                       <  1:384226‑M1/119‑1 (MQ=255)
                                                                                                                       tcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACAtttt                     <  1:42864‑M1/121‑1 (MQ=255)
                                                                                                                       gAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgcca                     >  1:301973‑M2/1‑30 (MQ=255)
                                                                                                                        cagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTAGACCGATGATGTCTCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTa                    <  1:97058‑M1/122‑1 (MQ=255)
                                                                                                                           taggttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATgg                 >  1:368164‑M1/19‑143 (MQ=255)
                                                                                                                           tCAAAATTTGTCTTTATTTTGTGCCGattaattatcccaatttatttgtagtgttttattttcagataatgcccgatgactttttcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtg                 >  2:133625‑M2/1‑26 (MQ=255)
                                                                                                                             agtttgcagcatcaccGTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGTAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATgggg               >  2:181206‑M1/17‑143 (MQ=255)
                                                                                                                             agttggcagcatccccTTGTGCCGCCAATAAATATCTGTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAACACGTGAGGTTAAAACTTCCTAATTCATGTCACATTTTATgggg               >  2:210553‑M1/17‑143 (MQ=255)
                                                                                                                                 ttGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcct           >  1:316756‑M2/1‑20 (MQ=255)
                                                                                                                                   cagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCGATTTACACCGATGATTTCGCAGCGCGTGAGAGTAAATCTTCCTGATTCATGTCAGAgtttattgggtgacta         <  2:67101‑M1/133‑7 (MQ=255)
                                                                                                                                    agcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGACTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGCCCCatcttatggggcgaccat        <  2:117311‑M1/134‑8 (MQ=255)
                                                                                                                                     tCTTTATTTTGTGCCGgttaatgactccaacttattgatagtgttttatgttcagatcatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcaga       >  2:136907‑M2/1‑16 (MQ=255)
                                                                                                                                     gcatcaccGTGCGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATc       >  1:412635‑M1/9‑143 (MQ=255)
                                                                                                                                       tttATTTTGTGCCGggtaatgactccaacttatggatagtgttttatgttcagataaggcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccggcccagccgtgccaggggctgcctcagagt     <  1:370379‑M2/143‑130 (MQ=255)
                                                                                                                                          gttttgGGCCGggtagtgactccaacttattgatagcgtgttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcag  >  2:201444‑M2/2‑11 (MQ=255)
                                                                                                                                          accTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGCAAAGACGCGGCATATAGCCCTATTTACACCTATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAgg  >  2:514860‑M1/4‑143 (MQ=255)
                                                                                                                                          aTTTTGTGCCGggttatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgagtttgagaacgacagcgacttccgtcccagtcgtgcctggtgctgcctcagattcag  >  2:28598‑M2/1‑11 (MQ=255)
                                                                                                                                             |                                                                                                                                           
ATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGG  >  NC_000913/1292891‑1293171

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.