| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 618,513 | IS5 (+) +4 bp | coding (260‑263/1134 nt) | fepE → | regulator of length of O‑antigen component of lipopolysaccharide chains |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 273955 = | NA (NA) | 44 (1.180) | 38/284 | 0.1 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 618513 = | 0 (0.000) | coding (260/1134 nt) | fepE | regulator of length of O‑antigen component of lipopolysaccharide chains | |||||
| * | ? | NC_000913 | = 275149 | NA (NA) | 40 (1.080) | 31/282 | 0.2 | 100% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 618516 | 0 (0.000) | coding (263/1134 nt) | fepE | regulator of length of O‑antigen component of lipopolysaccharide chains | |||||
CAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/275007‑275149‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATTTTTGCGGCAGGATGAAAGAGATCAGCAAGCCTGCGCAGGCAAACGCAAAAACGACCGCCAT < NC_000913/618516‑618383 CAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC < 1:260283/143‑1 AATCTCGTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTG < 2:355703/143‑1 ATCTCTTTTCTGATCTGACGGCGCGTGCTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGA < 2:261517/143‑1 TCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAA > 1:356392/1‑143 TCTCTTGTCGCGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAA < 1:32440/143‑1 TTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGGCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTT < 2:267274/143‑1 TGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCGAGATGACAAACATGATCTCATCTCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTC > 1:338732/1‑143 CGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTT < 2:516818/143‑1 CGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATTACAAACATGCTCTCATATCAGGGACTTGTTCGCACCTTCCTTCGTGCCTGCTTTCTCCCACCCTTGCC > 1:133728/1‑143 TTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACT < 1:277580/143‑1 TACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTCGCCCCTa > 2:315855/1‑142 CTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATGTCAGGGACTTGTTCGCACCTTCATTAGAGAATGATTTCTCCAACTCTTGCCACTAAACAG > 2:654550/1‑143 CTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGATCCAGATGGCAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAG > 1:252549/1‑143 TTCGCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCT < 2:529041/143‑1 TTCGCTGTCGGCGAAGGGACGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCT < 2:426011/143‑1 CGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGT < 2:618831/143‑1 AAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAA > 1:674831/1‑143 GTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCG < 2:441373/143‑1 AAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTCAACAGGTTCTGGAGGCGTGACAACCcac > 2:362426/1‑140 GACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATCTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGT > 2:605650/1‑143 TCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCA > 1:428641/1‑143 TCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCA > 1:372948/1‑143 atgagcAACCCTGTTCTATGGCTCCAGATGACAATCATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATT < 1:159105/137‑1 ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCACCTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATT < 1:62889/143‑1 ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATT > 1:389181/1‑143 aATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTCTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACCGGTTCTGGAGGCGTGCCAACCGCCGCCCTGGTCCATTTT > 2:642878/2‑143 CCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATTTTTGCGGC > 1:646454/1‑143 CCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTTCCGCTGGACAGGTTCTGGAGGCGTGACAACCGCCGCGAGGGGCCATTTTTGCGGCA > 1:59680/1‑143 ATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATTTTTGCGGCAGGATGAAA > 2:133287/1‑143 CTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCCTTTTTTCGGCAGGATGAAAGAGA > 2:525655/1‑143 TCCAGATGACAAACATGGTCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATTTTTGCGGCAGGATGAAAGAGAT < 2:232585/143‑1 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCACCTCTTGCCACTGAACAGGTTCTGGAGGCGTGATAACCGCCGCGCTGCTCCATTTTTGCGGCAGGATGAAAGAGATCAGCA > 1:318813/1‑143 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATTTTTGCGGCAGGATGAAAGAGATCAGCA < 2:674831/143‑1 AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACCGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATGTTTGCGGCGGGATGAAGGAGATCAGAAAGCCT > 2:363446/1‑143 AAACATGAGCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTCGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATTTTTGCGGCAGGATGAAAGAGATCAGCAAGCCT < 1:559046/143‑1 CTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGCATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGGGTGACAACCGCCGCGCTGGTCCATTTTTGCGGCAGGATGCAAGAGCTCAGCAAGCCCGCGgcggag > 1:528704/1‑137 TCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATTTTTGCGGCAGGATGAAAGAGATCAGCAAGCCTGCGCAGGCAA > 2:217099/1‑143 ATATCAGGTACTTGTTCGCACCTTCCTTAGTGAATGAAGGCGCCAACTCTTGCCACGGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATTTTTGCGGCAGGATGAAAGAGATCAGCAAGCCTGCGCAGGCAAAC < 1:162188/143‑1 attAGGGACTTGTTCGCACCTGCCTTAGTGAATTATTTCTCCTACTCTTGCCACTGAACATGTTCTGGAGGCGTGATAACCGCCGCGCTGGTCCATTTTTGCGGCAGGATGAAAGAGATCAGCAAGCCTGCGCAGGCAAACGC < 1:300402/140‑1 CGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATTTTTGCGGCAGGATGAAAGAGATCAGCAAGCCTGCGCAGGCAAACGCAAAAACGACCGCCA > 2:440850/1‑143 GCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATTTTTGCGGCAGGATGAAAGAGATCAGCAAGCCTGCGCAGGCAAACGCAAAAACGACCGCCAT < 2:372948/143‑1 CAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/275007‑275149‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATTTTTGCGGCAGGATGAAAGAGATCAGCAAGCCTGCGCAGGCAAACGCAAAAACGACCGCCAT < NC_000913/618516‑618383 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |