Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,293,032 IS1 (–) +8 bp intergenic (‑110/‑488) hns ← / → tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 257908 =NA (NA)57 (1.040) 49/284 0.1 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 = 1293039 0 (0.000)intergenic (‑117/‑488) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
* ? NC_000913 1293032 =0 (0.000)69 (1.260) 56/284 0.0 100% intergenic (‑110/‑495) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
?NC_000913 = 1979270 NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 127 total aligned reads displayed.

TTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGAC  >  NC_000913/1292897‑1293179
                                                                                                                                              |                                                                                                                                             
tttaGAATTTTAAGATCTTCGCTCTTTGGAGTAGTCTCAAACTTATATTTGGGTGGTTTGTTGAGGTAATAAGAGATCGTTAAATTCAGTTGTGCAGTAGCCAGGAATGTAAGGTATTCAGAACTGTGCTTTATTTTGGgccg                                                                                                                                               >  2:421638/4‑143 (MQ=255)
 gtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTgccgc                                                                                                                                              <  1:485019‑M1/9‑1 (MQ=255)
   aGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAGTTGTTCTTTATTTTGTGCCGggt                                                                                                                                            <  2:66353‑M2/143‑4 (MQ=255)
    gAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTTTGCCGggta                                                                                                                                           <  2:371800‑M2/143‑5 (MQ=255)
      aTTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTAAATTGCGGTCGAGGTTTGATGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaat                                                                                                                                         >  1:940157‑M2/1‑137 (MQ=255)
       ttttAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatg                                                                                                                                        <  1:405532‑M2/143‑8 (MQ=255)
         ttAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtgaggac                                                                                                                                      <  1:257358‑M2/143‑10 (MQ=255)
           gcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAatat                                                                                                                                    <  2:416731‑M1/19‑1 (MQ=255)
             gTGCTTCGCTCATTGTAGTAATCTCAAACTTAGATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatggctcca                                                                                                                                  <  1:275789‑M2/143‑14 (MQ=255)
              tttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATACATATCtt                                                                                                                                 <  1:799172‑M1/22‑1 (MQ=255)
              tttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCAGCCAATAAATATCtt                                                                                                                                 <  2:132546‑M1/22‑1 (MQ=255)
              tGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaa                                                                                                                                 >  1:669224‑M2/1‑129 (MQ=255)
               gCTTCGCTCATTGTAGTAATCTCCAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaac                                                                                                                                <  2:211144‑M2/143‑16 (MQ=255)
                  tCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTATGCCGggtaatgcatccaatgta                                                                                                                             <  2:551664‑M2/143‑19 (MQ=255)
                  ccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAACTATCTTGTCa                                                                                                                             <  2:952386‑M1/26‑1 (MQ=255)
                  cagacgcgcaccaccccctaacaagcggaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCa                                                                                                                             >  1:406141‑M1/118‑143 (MQ=255)
                   cgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCAt                                                                                                                            <  1:401483‑M1/27‑1 (MQ=255)
                   cgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagaatcaccTTGTGCCGCCAATAAATAACTTTTCAt                                                                                                                            <  2:305582‑M1/27‑1 (MQ=255)
                   cGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAGGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttat                                                                                                                            >  1:702203‑M2/1‑124 (MQ=255)
                     ttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCTTaa                                                                                                                          <  1:807823‑M1/29‑1 (MQ=255)
                     cTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattg                                                                                                                          <  2:723457‑M2/143‑22 (MQ=255)
                        aTTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgata                                                                                                                       >  1:416607‑M2/1‑119 (MQ=255)
                         gcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTATCATAAAAtt                                                                                                                      <  2:268472‑M1/33‑1 (MQ=255)
                          catcaccccgtccgtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTa                                                                                                                     >  2:784346‑M1/110‑143 (MQ=255)
                          caccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTa                                                                                                                     >  1:14236‑M1/110‑143 (MQ=255)
                           accaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATAACTTTTCCTAAAATTAg                                                                                                                    <  2:52913‑M1/35‑1 (MQ=255)
                             caccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGcc                                                                                                                  <  2:829802‑M1/37‑1 (MQ=255)
                                 ccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGaa                                                                                                              <  1:992146‑M1/41‑1 (MQ=255)
                                   ctcAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATCTAGAGCCGggtaatgactccaacttattgatagtgttttatgt                                                                                                            <  1:884602‑M2/143‑36 (MQ=255)
                                    tcAAACTTATATTGGGATGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgcctccaacttattgatagtgttttatgct                                                                                                           <  2:524451‑M2/143‑37 (MQ=255)
                                      aagCTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttca                                                                                                         >  2:31374‑M2/1‑105 (MQ=255)
                                      aaaaTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttcttgatagtgttttatgttca                                                                                                         <  1:391401‑M2/143‑39 (MQ=255)
                                      aaaCTTAGATGGGTGTGGGTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttca                                                                                                         >  2:506458‑M2/1‑105 (MQ=255)
                                           ctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGc                                                                                                    <  2:597012‑M1/51‑1 (MQ=255)
                                                         ttgttgAGGTAATAATAGAGCCTTGAATTCAGTTGTGCAATAGTCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt                                                                                      >  2:92892‑M2/1‑86 (MQ=255)
                                                         ttggtgAGGTAATAATAGTGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaccttattgatagtgttttatgttcagataatgcccgatgacttt                                                                                      >  2:762363‑M2/1‑86 (MQ=255)
                                                         tggttgagGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt                                                                                      >  1:271649‑M2/3‑86 (MQ=255)
                                                          tgttgACGTAATAATAGATGCTTAAATTCAGTTGTGCAAGAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGCGCCGggtaatgactccaacttattgctagtgttttatgttcagataatgcccgatgactttg                                                                                     >  1:94196‑M2/1‑85 (MQ=255)
                                                            ttgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttaagataatgcccgatgactttgtc                                                                                   <  1:589908‑M2/143‑61 (MQ=255)
                                                             tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAAGATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTacac                                                                                  >  2:158204‑M1/75‑143 (MQ=255)
                                                              gatagaaacagaagccactggagcacctcaaaaacaccatcatacactacatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCCGAAAAGAAGCGGCATATAGccctattttaccc                                                                                 <  2:538440‑M1/70‑6 (MQ=255)
                                                               aGGTAATAAGAGAGCCTTAAATTCAGTTGGGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatg                                                                                >  1:588282‑M2/1‑80 (MQ=255)
                                                                tagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTCGTGCCGCCAATAAATATCTTTTCATGAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATCTACACCga                                                                               <  1:118010‑M1/72‑1 (MQ=255)
                                                                 agaaacagacgccacgggagcgcctcaaaatcaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCgat                                                                              >  2:366210‑M1/71‑143 (MQ=255)
                                                                  gaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggccgcatcaccTTGTGCCGCCAATAAATATCTTTTAATAAAATTAGCCAGAAAAGAAGCGGCATATAGCCCTATTTACACCgatg                                                                             <  1:486023‑M1/74‑1 (MQ=255)
                                                                  gaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATACAATTTGCCTGAAAAGATGCGGCATATAGCACTATTTATACAgatg                                                                             <  1:314875‑M1/74‑1 (MQ=255)
                                                                  gaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGGCTTATTGGTACCgatg                                                                             <  2:382784‑M1/74‑1 (MQ=255)
                                                                     gaatagAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctc                                                                          >  2:82784‑M2/2‑74 (MQ=255)
                                                                      cagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGAttt                                                                         >  1:342879‑M1/66‑143 (MQ=255)
                                                                       agaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCACTAGCTATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGAGGATTTc                                                                        <  1:723941‑M1/79‑1 (MQ=255)
                                                                        gaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATgattttg                                                                       >  2:311024‑M1/64‑141 (MQ=255)
                                                                          cgccacgggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAAGATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCgca                                                                     >  1:383594‑M1/62‑143 (MQ=255)
                                                                          agccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCgca                                                                     >  2:843181‑M1/62‑143 (MQ=255)
                                                                             ccTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatt                                                                  <  1:968180‑M2/143‑78 (MQ=255)
                                                                             cactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGAAGATTTCgcagca                                                                  <  2:555156‑M1/85‑1 (MQ=255)
                                                                              actggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGCTTTCGCAGCAc                                                                 <  1:416391‑M1/86‑1 (MQ=255)
                                                                               ttAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatttt                                                                <  1:922501‑M2/143‑80 (MQ=255)
                                                                                tggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGt                                                               <  2:355084‑M1/88‑1 (MQ=255)
                                                                                tAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccgccgagtttg                                                               <  1:762609‑M2/143‑81 (MQ=255)
                                                                                  gagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGa                                                             >  1:531780‑M1/54‑143 (MQ=255)
                                                                                        ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCACATAGCCCTATTTACACCGATGATCTCGCAGCACGTGCGGCTaa                                                       <  2:843957‑M1/96‑1 (MQ=255)
                                                                                        ctcaaaaacaccatcatacactaaatcagtaagttggcagcataaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGCCGCGGCATATAGCCCTATTTACAACGATGATTTCGACTGACGTGAAGTTaa                                                       <  2:173165‑M1/96‑1 (MQ=255)
                                                                                         tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaaa                                                      <  1:113028‑M1/97‑1 (MQ=255)
                                                                                         ctgtgcAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgaca                                                      >  2:811599‑M2/2‑54 (MQ=255)
                                                                                          gtaaaacaccatcgaacactaaatcattaagttgtcagcatcaccCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAACGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaaaa                                                     >  2:601062‑M1/46‑143 (MQ=255)
                                                                                           aaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGAAGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAAc                                                    <  2:794654‑M1/99‑1 (MQ=255)
                                                                                            aaaacaccttcattcactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACt                                                   >  1:631132‑M1/44‑143 (MQ=255)
                                                                                            aaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACt                                                   <  1:347326‑M1/100‑1 (MQ=255)
                                                                                             gCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcga                                                  >  1:538893‑M2/1‑50 (MQ=255)
                                                                                             aaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACtt                                                  <  2:764689‑M1/101‑1 (MQ=255)
                                                                                              cAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctctgcggattttgacaacgacagcgac                                                 <  2:740062‑M2/143‑95 (MQ=255)
                                                                                                 accatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTg                                              <  1:202045‑M1/105‑1 (MQ=255)
                                                                                                   gCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGACGggttgcctagccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccg                                            >  1:940084‑M2/1‑44 (MQ=255)
                                                                                                   catcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGCAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTCAACCTTCCTGAt                                            <  2:658952‑M1/107‑1 (MQ=255)
                                                                                                    ccAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgt                                           >  2:730764‑M2/1‑43 (MQ=255)
                                                                                                    atcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTCAAACTTCCTTAtt                                           <  1:473884‑M1/108‑1 (MQ=255)
                                                                                                     tcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCAATTTACAGCGATGATTTCGCAGCACGTGAGGTTAAAACTTCATGatta                                          <  2:963450‑M1/109‑2 (MQ=255)
                                                                                                     cAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgccgctccaccgattttcagaacgacggcgacttcgctc                                          <  2:952656‑M2/143‑102 (MQ=255)
                                                                                                      aGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactcaaaattattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatgttgagaacgaaagcgacttccgtcc                                         <  1:347317‑M2/143‑103 (MQ=255)
                                                                                                        tacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTCCCTGATTCATg                                       <  2:470266‑M1/112‑1 (MQ=255)
                                                                                                        gAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtccca                                       >  1:665753‑M2/1‑39 (MQ=255)
                                                                                                         acactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGt                                      >  1:416731‑M1/31‑143 (MQ=255)
                                                                                                           actaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCGTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCCTGTca                                    <  1:188382‑M1/115‑1 (MQ=255)
                                                                                                              aaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACAt                                 <  2:546433‑M1/118‑1 (MQ=255)
                                                                                                              aaGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtg                                 <  1:974536‑M2/143‑111 (MQ=255)
                                                                                                               aGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcacgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttacgttccagccgtgc                                <  2:513148‑M2/143‑112 (MQ=255)
                                                                                                                ggAATTCAAATTTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgcc                               >  2:149691‑M2/1‑31 (MQ=255)
                                                                                                                   agtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTAt                           >  1:355084‑M1/21‑143 (MQ=255)
                                                                                                                       aaaaTTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgct                        >  1:982202‑M2/1‑24 (MQ=255)
                                                                                                                       aaaaTTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgtacagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgct                        >  1:723457‑M2/1‑24 (MQ=255)
                                                                                                                        gttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTCTTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTAtggggg                      <  1:723932‑M1/128‑2 (MQ=255)
                                                                                                                        gttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCGGATTCATGTCAAATGATAtggggg                      <  1:794095‑M1/128‑2 (MQ=255)
                                                                                                                              ttCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcag                 >  2:746737‑M2/1‑17 (MQ=255)
                                                                                                                                 atcaccTAGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTACTTACACCGATGCTTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATATCCATTTCTATGGGGAGATTatcta             <  2:816740‑M1/137‑3 (MQ=255)
                                                                                                                                   tATTTTGTGCCGggtaatgtcttcaacttattgatagtgttttaggttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattca            >  2:272661‑M2/1‑12 (MQ=255)
                                                                                                                                         gtgCCGACAAGAAATGTCTGTTCATAAAATGAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACCTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTgac     <  1:273596/143‑1 (MQ=255)
                                                                                                                                           gCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttctgc    >  1:231484‑M2/1‑4 (MQ=255)
                                                                                                                                            ccgccAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTgacgac  >  1:915329/1‑143 (MQ=255)
                                                                                                                                            ccgccAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTgacgac  >  2:283664/1‑143 (MQ=255)
                                                                                                                                             cGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgacaacgacagcgacttccgtcccagccgtgacaggtgcagcctcagagtcaagttatgccg  <  1:832150‑M2/143‑142 (MQ=255)
                                                                                                                                              |                                                                                                                                             
TTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGAC  >  NC_000913/1292897‑1293179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.