mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 43.4% | 42.3 / 91.6 | 77 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 28 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 118 (1.140) | 21 (0.220) | 20/268 | 5.0 | 13.7% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 155 (1.590) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4542682 = | 119 (1.150) | 19 (0.200) | 17/268 | 5.7 | 12.4% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 158 (1.620) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 1207805 | 60 (0.580) | 18 (0.200) | 16/254 | 5.7 | 22.2% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 73 (0.790) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 67 (0.640) | 9 (0.100) | 8/254 | 8.4 | 12.0% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 73 (0.790) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 3541232 = | 107 (1.030) | 5 (0.050) | 5/272 | 10.2 | 4.4% | coding (826/2322 nt) | feoB | ferrous iron transporter protein B and GTP‑binding protein; membrane protein |
| ? | NC_000913 | 3541270 = | 115 (1.160) | coding (864/2322 nt) | feoB | ferrous iron transporter protein B and GTP‑binding protein; membrane protein | |||||
| * | ? | NC_000913 | 3383284 = | 118 (1.140) | 4 (0.040) | 4/262 | 10.6 | 3.4% | intergenic (+17/+46) | degS/mdh | serine endoprotease, periplasmic/malate dehydrogenase, NAD(P)‑binding |
| ? | NC_000913 | 3383314 = | 118 (1.240) | intergenic (+47/+16) | degS/mdh | serine endoprotease, periplasmic/malate dehydrogenase, NAD(P)‑binding | |||||
| * | ? | NC_000913 | 3423332 = | 129 (1.240) | 4 (0.040) | 4/268 | 10.7 | 3.7% | intergenic (+138/+91) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4171852 | 89 (0.910) | intergenic (+96/‑205) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913 | 3423332 = | 129 (1.240) | 4 (0.040) | 4/268 | 10.7 | 3.3% | intergenic (+138/+91) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4040732 | 116 (1.190) | intergenic (+96/+174) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913 | 3708382 = | 87 (0.840) | 6 (0.060) | 4/270 | 10.8 | 5.9% | intergenic (‑677/+234) | dppA/proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| ? | NC_000913 | 3708542 = | 110 (1.120) | intergenic (‑837/+74) | dppA/proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro | |||||
| * | ? | NC_000913 | 3708366 = | 93 (0.900) | 6 (0.060) | 4/270 | 10.8 | 6.6% | intergenic (‑661/+250) | dppA/proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| ? | NC_000913 | 3708390 = | 82 (0.840) | intergenic (‑685/+226) | dppA/proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro | |||||