New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3769048 =	103 (1.060)	4 (0.040)	4/256	11.5	3.6%	pseudogene (74/282 nt)	yibW	pseudogene, rhsA‑linked
	?	NC_000913	3769075 =	114 (1.240)					pseudogene (101/282 nt)	yibW	pseudogene, rhsA‑linked
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTGCATGTCATTAGATAAACCAGTTATACAACCCTCGGAACAGAATCGAGGTCCTAAAGACGGACCAAAAGCGTTTAAACAACTATGTATTGAAAATCCATTGCGATTATAAGTTCCTGTATTAACTGACGGTACTAATCGTATGCCGTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3769199‑3769048 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgtcagTTAATACAGGAACTTATAATCGCAATGGATTTTCAATACATAGTTGTTTAAACGCTTTTGGTCCGTCTTTAGGACCTCGATTCTGTTCCGAGGGTTGTATAACTGGTTTATCTAATGACATGCAAAAATTAAATGAGTTAATATTTT  >  NC_000913/3769075‑3769221                                                                                                                                                                                                                                                                                                             TTGCATGTCATTAGATAAACCAGTTATACAACCCTCGGAACAGACTCGAGGGCCTAAAGACGGACCAAAAGCGTTTAAACAACTATGTATTGAAAATCCCTTGCGATTATAAGTTCCTGTATTAACTGACGGTACTAATCGTATGCCG                                                                                                                                                         <  1:261623/148‑1    CATGTCATTAGATAAACCAGTTATACAACCCTCGGAACAGAATCGAGGTCCTAAAGACGGACCAAAAGCGTTTAAACAACTATGTATTGAAAATCCATTGCGATTATAAGTTCCTGTATTAACTGACGGTACTAATCGTATGCCGTCA                                                                                                                                                      <  1:174861/148‑1    CATGTCATTAGATAAACCAGTTATACAACCCTCGGAACAGAATCGAGGTCCTAAAGACGGACCAAAAGCGTTTAAACAACTATGTATTGAAAATCCATTGCGATTATAAGTTCCTGTATTAACTGACGGTACTAATCGTATGCCGTCA                                                                                                                                                      <  7:1229/148‑1    CATGTCATTAGATAAACCAGTTATACAACCCTCGGAACAGAATCGAGGTCCTAAAGACGGACCAAAAGCGTTTAAACAACTATGTAATGAAAATCCATTGCGATTATAAGTTCCTGTATTAACTGACGGTACTAATCGTATGCCGTCAG                                                                                                                                                     <  6:334323/149‑1    CATGTCATTAGATAAACCAGTTATACAACCCTCGGAACAGAATCGAGGTCCTAAAGACGGACCAAAAGCGTCTAAACAACTATGTATTGAAAATCCATTGCGATTATAAGTTCCTGTATTAACTGACGGTACTAATCGTATGCCGTCA                                                                                                                                                      <  5:265040/148‑1        TCATTAGATAAACCAGTTATACAACCCTCGGAACAGAATCGAGGTCCTAAAGACGGACCAAAAGCGTTTAAACAACTATGTATTGAAAATCCATTGCGATTATAAGTTCCTGTATTAACTGACGGTACTAATCGTATGCC                                                                                                                                                          >  1:287182/1‑140        TCATTAGATAAACCAGTTATACAACCCTCGGAACAGAATCGAGGTCCTAAAGACGGACCAAAAGCGTTTAAACAACTATGTATTGAAAATCCATTGCGATTATAAGTTCCTGTATTAACTGACGGTACTAATCGTATGCC                                                                                                                                                          <  2:287182/140‑1                                                                                                                           TAACTGACGGTACTAATCGTATGCCGTCAGTTAATACAGGAACTTATAATCGCAATGGATTTTCAATACATAGTTGTTTAAACGCTTTTGGTCCGTCTTTAG                                                                             <  7:256556/102‑1                                                                                                                           TAACTGACGGTACTAATCGTATGACGTCAGTTAATACAGGAACTTATAATCGCAATGGATTTTCAATACATAGTTGTTTAAACGCTTTTGGTCCGTCTTTAG                                                                             >  8:256556/1‑102                                                                                                                               TGACGGTACTAATCGTATGCCGTCAGTTAATACAGGAACTTATAATCGCAATGGATTTTCAATACATAGTTGT                                                                                                      >  1:243816/1‑73                                                                                                                               TGACGGTACTAATCGTATGCCGTCAGTTAATACAGGAACTTATAATCGCAATGGATTTTCAATACATAGTTGT                                                                                                      <  2:243816/73‑1                                                                                                                                                   CGTCAGTTAATACAGGAACTTATAATCGCAATGGATTTTCAATACATAGTTGTTTAAACGCTTTTGGTCCGTCTTTAGGACCTCGATTCTGTTCCGAGGGTTGTATAACTGGTTTATCTAATGACATGCAAAAATTAAATGAGTTAATA      <  3:18036/149‑1                                                                                                                                                   CGTCAGTTAATACAGGAACTTATAATCGCAATGGATTTTCAATACATACTTGTTAAAACGCTTAAGGTCAGTCATTAGGAACACGATTCTGTTCCGAGGGTAGTATAACTGGATTATCTAATGACATGAAAAAATTAAATGAGTTAATA      >  1:65067/1‑149                                                                                                                                                       AGTTAATACAGGAACTTATAATCGCAATGGATTTTCAATACATAGTTGTTTAAACGCTTTTG                                                                                         >  3:239761/1‑62                                                                                                                                                       AGTTAATACAGGAACTTATAATCGCAATGGATTTTCAATACATAGTTGTTTAAACGCTTTTG                                                                                         <  4:239761/62‑1                                                                                                                                                       AGTTAAAATATGAACTTATAATCTAAATTGATTTTAAATACATAGTTGTTTAAACGCTTTTGGTCCGTCTTTAGGACTTCGATTCTGTTCCGAGGGTTGTATAACTGGTTTATCTAATGACATGCAAAAATTAAATGAGTTAATATTTT  <  6:65517/149‑1                                                                                                                                                        GTTAATACAGGAACTTATAATCGCAATGGATTTTCAATACATAGTTGTTTAAACGCTTTTGGTCCGTCTTTAGGACCTCGATTCTGTTCCGAGGGTTGTATAACTGGTTTATCTAATGACATGCAAAAATTAAATGAGTTAATATTTT  >  7:206912/1‑148                                                                                                                                                        GTTAATACAGGAACTTATAATCGCAATGGATTTTCAATACATAGTTGTTTAAACGCTTTTGGTCCGTCTTTAGGACCTCGATTCTGTTCCGAGGGTTGTATAACTGGTTTATCTAATGACATGCAAAAATT                   <  2:278460/131‑1                                                                                                                                                        GTTAATACAGGAACTTATAATCGCAATGGATTTTCAATACATAGTTGTTTAAACGCTTTTGGTCCGTCTTTAGGACCTCGATTCTGTTCCGAGGGTTGTATAACTGGTTTATCTAATGACATGCAAAAATT                   >  1:278460/1‑131                                                                                                                                                        GTTAATACAGGAACTTATAATCGCAATGGATTTTCAATACATAGTTGTTTAAACGCTTTTGGTCCGTCTTTAGGACCTCGATTCTG                                                                <  7:364614/86‑1                                                                                                                                                        GTTAATACAGGAACTTATAATCGCAATGGATTTTAAATACATAGTTGTTTAAACGCTTTTGGTCCGTCTTTAGGACCTCGATACTG                                                                >  8:364614/1‑86                                                                                                                                                                                                                                                                                                             TTGCATGTCATTAGATAAACCAGTTATACAACCCTCGGAACAGAATCGAGGTCCTAAAGACGGACCAAAAGCGTTTAAACAACTATGTATTGAAAATCCATTGCGATTATAAGTTCCTGTATTAACTGACGGTACTAATCGTATGCCGTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3769199‑3769048 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgtcagTTAATACAGGAACTTATAATCGCAATGGATTTTCAATACATAGTTGTTTAAACGCTTTTGGTCCGTCTTTAGGACCTCGATTCTGTTCCGAGGGTTGTATAACTGGTTTATCTAATGACATGCAAAAATTAAATGAGTTAATATTTT  >  NC_000913/3769075‑3769221

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.