mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 23.5% | 61.8 / 16.3 | 34 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 32 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4555361 = | 75 (2.240) | 9 (0.290) | 8/246 | 2.3 | 11.2% | intergenic (+12/+129) | uxuR/yjiC | fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor/uncharacterized protein |
| ? | NC_000913 | 4555390 = | 73 (2.360) | intergenic (+41/+100) | uxuR/yjiC | fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor/uncharacterized protein | |||||
| * | ? | NC_000913 | = 1468681 | NA (NA) | 11 (0.490) +44 bp |
3/178 | 3.0 | NA | noncoding (560/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 1650843 = | NA (NA) | noncoding (1/706 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 2066832 | 3 (0.090) | 5 (0.160) | 5/248 | 3.1 | 64.1% | noncoding (522/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2102447 | NA (NA) | noncoding (497/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 2066832 | 3 (0.090) | 5 (0.160) | 5/248 | 3.1 | 67.6% | noncoding (522/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2066857 | 2 (0.060) | noncoding (497/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 6 (0.190) | 5/248 | 3.1 | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 4037399 = | NA (NA) | 13 (0.390) | 5/262 | 3.3 | 86.8% | intergenic (+64/‑120) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon |
| ? | NC_000913 | 4209883 = | 2 (0.060) | intergenic (+34/‑160) | gltV/rrlE | tRNA‑Glu/23S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | 4037399 = | NA (NA) | 13 (0.390) | 5/262 | 3.3 | 26.3% | intergenic (+64/‑120) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon |
| ? | NC_000913 | 4168481 = | 37 (1.110) | intergenic (+34/‑160) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913 | 3943544 = | 1 (0.030) | 13 (0.390) | 5/262 | 3.3 | 93.0% | intergenic (+34/‑160) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | 4037399 = | NA (NA) | intergenic (+64/‑120) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 303629 | 64 (1.910) | 4 (0.130) | 4/240 | 3.4 | 6.3% | intergenic (+24/+224) | yagU/ykgJ | DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein |
| ? | NC_000913 | = 303636 | 61 (2.020) | intergenic (+31/+217) | yagU/ykgJ | DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein | |||||
| * | ? | NC_000913 | 4160048 = | 24 (0.720) | 4 (0.130) | 4/250 | 3.5 | 14.4% | coding (743/1401 nt) | sthA | pyridine nucleotide transhydrogenase, soluble |
| ? | NC_000913 | 4160090 = | 25 (0.800) | coding (701/1401 nt) | sthA | pyridine nucleotide transhydrogenase, soluble | |||||