mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 27.6% | 118.1 / 51.7 | 76 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,628,213 | 0 | C | A | 20.4% | 92.4 / 13.1 | 44 | A442A (GCG→GCT) | rbbA | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein |
| * | NC_000913 | 3,628,199 | 0 | C | T | 20.0% | 85.5 / 11.3 | 41 | W447* (TGG→TAG) | rbbA | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein |
| Marginal new junction evidence (lowest skew 10 of 35 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 84 (0.950) | 16 (0.200) | 14/246 | 6.2 | 19.5% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 58 (0.740) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 4542690 | 96 (1.080) | 11 (0.130) | 8/260 | 8.9 | 9.9% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 111 (1.340) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 1207805 | 73 (0.820) | 7 (0.090) | 7/246 | 9.0 | 10.2% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 58 (0.740) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 4542682 = | 101 (1.140) | 7 (0.080) | 6/260 | 9.9 | 6.4% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 112 (1.350) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 2579153 | 77 (0.870) | 7 (0.080) | 6/262 | 9.9 | 9.0% | coding (488/951 nt) | talA | transaldolase A |
| ? | NC_000913 | = 2579157 | 69 (0.830) | coding (492/951 nt) | talA | transaldolase A | |||||
| * | ? | NC_000913 | 1612080 = | 77 (0.870) | 6 (0.070) | 6/262 | 9.9 | 8.1% | coding (246/360 nt) | yneG | DUF4186 family protein |
| ? | NC_000913 | 1612101 = | 64 (0.770) | coding (225/360 nt) | yneG | DUF4186 family protein | |||||
| * | ? | NC_000913 | = 1932093 | NA (NA) | 5 (0.060) | 5/252 | 10.2 | NA | noncoding (8/19 nt) | REP136 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP136 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 1932096 | NA (NA) | noncoding (11/19 nt) | REP136 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP136 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 1568904 = | 116 (1.310) | 4 (0.050) | 4/256 | 11.0 | 3.7% | intergenic (‑81/+50) | yddW/gadC | liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter |
| ? | NC_000913 | 1568931 = | 101 (1.240) | intergenic (‑108/+23) | yddW/gadC | liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter | |||||
| * | ? | NC_000913 | = 435350 | 87 (0.980) | 4 (0.050) | 4/258 | 11.0 | 4.9% | coding (214/420 nt) | nusB | transcription antitermination protein |
| ? | NC_000913 | = 435366 | 74 (0.900) | coding (230/420 nt) | nusB | transcription antitermination protein | |||||
| * | ? | NC_000913 | = 235667 | 72 (0.810) | 4 (0.050) | 4/258 | 11.0 | 5.7% | coding (336/468 nt) | rnhA | ribonuclease HI, degrades RNA of DNA‑RNA hybrids |
| ? | NC_000913 | = 235673 | 66 (0.800) | coding (330/468 nt) | rnhA | ribonuclease HI, degrades RNA of DNA‑RNA hybrids | |||||