| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,625,589 | Δ95,041 bp | yhhJ–[mokA] | 82 genes yhhJ, rbbA, yhiI, yhiJ, yhiL, yhiL, yhiM, yhiN, pitA, uspB, uspA, dtpB, rsmJ, prlC, rlmJ, gor, dinQ, agrA, agrB, arsR, arsB, arsC, yhiS, insH1, yhiS, slp, dctR, yhiD, hdeB, hdeA, hdeD, arrS, gadE, mdtE, mdtF, gadW, gadY, gadX, gadA, yhjA, treF, yhjB, yhjC, yhjD, yhjE, yhjG, yhjH, kdgK, yhjJ, dctA, yhjK, bcsC, bcsZ, bcsB, bcsA, bcsQ, yhjR, bcsE, bcsF, bcsG, ldrD, rdlD, yhjV, dppF, dppD, dppC, dppB, dppA, proK, eptB, yhjX, yhjY, tag, yiaC, bisC, yiaD, ghrB, yiaF, yiaG, cspA, hokA, [mokA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3625589 | 3720629 | 95041 | 28 [0] | [0] 29 | yhhJ–[mokA] | yhhJ,rbbA,yhiI,yhiJ,yhiL,yhiL,yhiM,yhiN,pitA,uspB,uspA,dtpB,rsmJ,prlC,rlmJ,gor,dinQ,agrA,agrB,arsR,arsB,arsC,yhiS,insH1,yhiS,slp,dctR,yhiD,hdeB,hdeA,hdeD,arrS,gadE,mdtE,mdtF,gadW,gadY,gadX,gadA,yhjA,treF,yhjB,yhjC,yhjD,yhjE,yhjG,yhjH,kdgK,yhjJ,dctA,yhjK,bcsC,bcsZ,bcsB,bcsA,bcsQ,yhjR,bcsE,bcsF,bcsG,ldrD,rdlD,yhjV,dppF,dppD,dppC,dppB,dppA,proK,eptB,yhjX,yhjY,tag,yiaC,bisC,yiaD,ghrB,yiaF,yiaG,cspA,hokA,[mokA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3625588 | 0 (0.000) | 27 (0.880) | 24/282 | 0.3 | 100% | intergenic (+74/+91) | yhhI/yhhJ | putative transposase/putative ABC transporter permease |
| ? | NC_000913 | 3720630 = | NA (NA) | pseudogene (3/185 nt) | mokA | pseudogene, overlapping regulatory peptide, enables hokB; completely contained in another CDS | |||||
AGAAACTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3625470‑3625588‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTG > NC_000913/3720630‑3720776 AGAAACTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAGTATGTACTGCACCCATTTTGTTGGACGAT > 2:138852/1‑149 AACTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAGTATGTACTGCACCCATTTTGTTGGACGATGA > 5:56877/1‑148 AACTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAGTATGTACTGCACCCATTTTGTTGGACGATGA > 1:107106/1‑148 GCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAAT < 2:120932/147‑1 CGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGC < 2:63932/149‑1 AGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGC < 2:13790/149‑1 GGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAA < 2:122813/149‑1 CCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAG > 8:44135/1‑149 CCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGACCCTAATATGTCAACGCCAAAATACCCTTTTGAAAAG > 7:49820/1‑149 GAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGTCATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCC > 8:57894/1‑149 CAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAA < 6:56877/149‑1 AGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAA < 8:49820/149‑1 TATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATC < 2:107106/149‑1 TATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAAT > 5:21404/1‑148 ATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGC > 2:78217/1‑130 ATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGC < 1:78217/130‑1 TCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCAC > 7:105079/1‑149 TCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTGGAAAAGCGCCTTGAAGTCGTGAATCAC > 5:124505/1‑149 AAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACT > 3:111926/1‑149 GAAACTGTCCAGGTTTTGGGGGTCAGTTCAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGAT > 3:53190/1‑149 CTGTCCAGGTTTTGGGGGTCAGTTCAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTT < 7:44135/149‑1 TGTCCAGGTTTTGGGGGTCAGTTCAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTA > 2:88175/1‑149 CAGGTTTTGGGGGTCAGTTCAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAG > 7:83662/1‑148 GGTTTTGGGGGTCAGTTCAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGAT > 5:121160/1‑149 GTCAGTTCAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCA > 5:10901/1‑149 TCAGTTCAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCAC > 6:108770/1‑149 GTTCAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTT > 1:117936/1‑149 AGTATGTACTGCACCCATTTTGTTGGACGATGAAAGGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGGTACAGGATCATCTCGGCACGTTTTG < 6:124505/148‑1 AGAAACTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3625470‑3625588‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTG > NC_000913/3720630‑3720776 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |