mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,707,028 | 0 | T | G | 26.7% | 47.9 / 19.5 | 30 | V37G (GTA→GGA) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| * | NC_000913 | 1,707,029 | 0 | A | G | 26.7% | 41.3 / 16.1 | 30 | V37V (GTA→GTG) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| * | NC_000913 | 1,707,030 | 0 | C | T | 26.7% | 47.0 / 15.2 | 30 | P38S (CCC→TCC) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| * | NC_000913 | 1,707,031 | 0 | C | A | 26.7% | 60.5 / 15.2 | 30 | P38H (CCC→CAC) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| * | NC_000913 | 1,799,374 | 1 | . | T | 20.6% | 81.9 / 28.9 | 34 | intergenic (‑104/+19) | pheM/rplT | phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20 |
| * | NC_000913 | 4,296,060 | 0 | C | T | 20.4% | 96.5 / 21.1 | 49 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 1,799,370 | 0 | A | . | 20.0% | 93.0 / 19.9 | 35 | intergenic (‑100/+23) | pheM/rplT | phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20 |
| Marginal new junction evidence (lowest skew 10 of 95 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3792764 | 62 (1.740) | 4 (0.120) | 6/226 | 2.6 | 6.3% | intergenic (‑213/+62) | kbl/yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
| ? | NC_000913 | = 3792768 | 62 (1.910) | intergenic (‑217/+58) | kbl/yibB | glycine C‑acetyltransferase/YibB family protein, function unknown | |||||
| * | ? | NC_000913 | 3603646 = | 38 (1.070) | 6 (0.180) | 5/238 | 3.1 | 15.3% | coding (598/1494 nt) | ftsY | Signal Recognition Particle (SRP) receptor |
| ? | NC_000913 | 3603693 = | 30 (0.880) | coding (551/1494 nt) | ftsY | Signal Recognition Particle (SRP) receptor | |||||
| * | ? | NC_000913 | 1097426 = | NA (NA) | 9 (0.260) | 5/244 | 3.1 | 47.8% | intergenic (+597/+139) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097455 = | 10 (0.280) | intergenic (+626/+110) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1097245 = | NA (NA) | 9 (0.260) | 5/244 | 3.1 | 56.6% | intergenic (+416/+320) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097274 = | 7 (0.200) | intergenic (+445/+291) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1097062 = | 28 (0.790) | 9 (0.260) | 5/244 | 3.1 | 33.0% | intergenic (+233/+503) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097457 = | 9 (0.260) | intergenic (+628/+108) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1097062 = | 28 (0.790) | 9 (0.260) | 5/244 | 3.1 | 34.9% | intergenic (+233/+503) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097276 = | 6 (0.170) | intergenic (+447/+289) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 246146 | 66 (1.850) | 4 (0.120) | 4/224 | 3.2 | 6.5% | coding (94/279 nt) | yafQ | mRNA interferase toxin of toxin‑antitoxin pair YafQ/DinJ |
| ? | NC_000913 | = 246167 | 56 (1.740) | coding (73/279 nt) | yafQ | mRNA interferase toxin of toxin‑antitoxin pair YafQ/DinJ | |||||
| * | ? | NC_000913 | 3920240 = | 34 (0.950) | 4 (0.120) | 4/232 | 3.3 | 11.0% | coding (164/534 nt) | atpH | F1 sector of membrane‑bound ATP synthase, delta subunit |
| ? | NC_000913 | 3920260 = | 33 (0.990) | coding (144/534 nt) | atpH | F1 sector of membrane‑bound ATP synthase, delta subunit | |||||
| * | ? | NC_000913 | = 3574971 | 35 (0.980) | 4 (0.120) | 4/232 | 3.3 | 9.3% | intergenic (‑93/‑100) | asd/yhgN | aspartate‑semialdehyde dehydrogenase, NAD(P)‑binding/UPF0056 family inner membrane protein |
| ? | NC_000913 | = 3575007 | 45 (1.350) | intergenic (‑129/‑64) | asd/yhgN | aspartate‑semialdehyde dehydrogenase, NAD(P)‑binding/UPF0056 family inner membrane protein | |||||
| * | ? | NC_000913 | = 3036584 | 34 (0.950) | 4 (0.120) | 4/228 | 3.3 | 10.2% | coding (1523/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| ? | NC_000913 | = 3036607 | 39 (1.190) | coding (1500/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific | |||||