Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 4,473,613 | G→A | 6.8% | A147A (GCC→GCT) | bdcA ← | c‑di‑GMP‑binding biofilm dispersal mediator protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,473,613 | 0 | G | A | 6.8% | 190.2 / 3.1 | 59 | A147A (GCC→GCT) | bdcA | c‑di‑GMP‑binding biofilm dispersal mediator protein |
Reads supporting (aligned to +/- strand): ref base G (29/26); new base A (2/2); total (31/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.40e-01 |
ATGCAACATATCGCGCATTGGCCCGTTGGCGGGATTAGCGTCGGTATCAATTGGCCCTGGCTGGACGACGTTAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCATCTGCCGGGCGGCTTCAACAGAGGCATGATAAGGAGCATGAATATTGATTTTGAAAAGGCGATCAA > NC_000913/4473469‑4473758 | aTGCAACATATCGCGCATTGGCCCGTTGGCGGGATTAGCGTCGGTATCAATTGGCCCTGGCTGGACGACGTTAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCa > 7:96082/1‑148 (MQ=255) atatCGCGCATTGGCCCGTTGGCGGGATTAGCGTCGGTATCAATTGGCCCTGGCTGGACGACGTTAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAagcag > 5:302629/1‑148 (MQ=255) tCGCGCATTGGCCCGTTGGCGGGATTAGCGTCGGTATCAATTGGCCCTGGCTGGACGACGTTAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGcc < 6:302629/147‑1 (MQ=255) gcgcATTGGCCCGTTGGCGGGATTAGCGTCGGTATCAATTGGCCCTGGCTGGACGACGTTAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATg < 8:96082/148‑1 (MQ=255) tGGCGGGATTAGCGTCGGTATCAATTGGCCCTGGCTGGACGACGTTAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATaa > 6:25816/1‑125 (MQ=255) tGGCGGGATTAGCGTCGGTATCAATTGGCCCTGGCTGGACGACGTTAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATaa < 5:25816/125‑1 (MQ=255) ggCGGGATTAGCGTCGGTATCAATTGGCCCTGGCTGGACGACGTTAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCAt < 1:46781/147‑1 (MQ=255) tAGCGTCGGTATCAATTGGCCCTGGCTGGACGACGTTAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGcc > 6:201589/1‑122 (MQ=255) tAGCGTCGGTATCAATTGGCCCTGGCTGGACGACGTTAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGcc < 5:201589/122‑1 (MQ=255) ggTATCAATTGGCCCTGGCTGGACGACGTTAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACg < 4:319260/148‑1 (MQ=255) tATCAATTGGCCCTGGCTGGACGACGTTAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGcc < 7:386335/113‑1 (MQ=255) tATCAATTGGCCCTGGCTGGACGACGTTAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGcc > 8:386335/1‑113 (MQ=255) cAATTGGCCCTGGCTGGACGACGTTAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGcc > 2:252836/1‑148 (MQ=255) cAATTGGCCCTGGCTGGACGACGTTAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGcc > 3:87923/1‑148 (MQ=255) ccTGGCTGGACGACGTTAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGAtt > 4:169522/1‑147 (MQ=255) tggctggACGACGTTAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGcc < 6:87509/100‑1 (MQ=255) tggctggACGACGTTAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGcc > 5:87509/1‑100 (MQ=255) tggctggACGACGTTAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGCGCCGATGAtt > 1:208624/1‑145 (MQ=255) tggctggACGACGTTAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGAtt > 2:117774/1‑145 (MQ=255) ggctggACGACGTTAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGAtt > 3:134801/1‑144 (MQ=255) gctggACGACGTTAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAg < 1:117774/146‑1 (MQ=255) gctggACGACGTTAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAg < 5:220115/146‑1 (MQ=255) gctggACGACGTTAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAg < 4:87923/146‑1 (MQ=255) cgacgTTAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAg > 7:182618/1‑140 (MQ=255) cgacgTTAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAg < 8:182618/140‑1 (MQ=255) ttAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCtt > 8:29055/1‑148 (MQ=255) tAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTc > 4:282394/1‑148 (MQ=255) tAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTc > 5:255992/1‑148 (MQ=255) ggTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCggg > 4:202704/1‑147 (MQ=255) gTGATCCCCCGCGGGCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCa > 6:127912/1‑148 (MQ=255) tCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCATCTg > 5:250618/1‑148 (MQ=255) cccACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCATCTGc > 4:1554/1‑148 (MQ=255) aCGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTc > 3:328042/1‑103 (MQ=255) aCGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTc < 4:328042/103‑1 (MQ=255) cgcgGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCATCTGCCggg < 1:252836/148‑1 (MQ=255) ccAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGcc < 8:356599/66‑1 (MQ=255) ccAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGcc > 7:356599/1‑66 (MQ=255) ccAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTaa < 6:184395/113‑1 (MQ=255) ccAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCATCTGCCGGGCGGCtt > 3:187201/1‑148 (MQ=255) ccAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGCGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTaa > 5:184395/1‑113 (MQ=255) cAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCATCTGCCGGGCGGCtt < 4:134801/147‑1 (MQ=255) aaTCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCATCTGCCGGGCGGCTTCAAc < 6:250618/148‑1 (MQ=255) aGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCATCTGCCGGGCGGCTTCAACAGAGGCATGAt < 3:202704/148‑1 (MQ=255) gCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTGGCGGAGCCGATGATTAAGATGCGCCCGCGTGCGGGCCTCTGCCGGGCGGCTTCAGCTGGGGCATgg > 2:334566/1‑145 (MQ=255) gCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCATCTGCCGGGCGGCTTCAACAGAGGCATGATa < 3:169522/148‑1 (MQ=255) gCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCATCTGCCGGGCGGCTTCAACAGAGGCATGATa < 1:334566/148‑1 (MQ=255) cgcgcgCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCATCTGCCGGGCGGCTTCAACAGAGGCATGATAAg > 2:130392/1‑147 (MQ=255) cgcgcCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCATCTGCCGGGCGGCTTCAACAGAGGCATGATAAGGAg > 1:29475/1‑148 (MQ=255) cATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCATCTGCCGGGCGGCTTCAACAGAGGCATGATAAGGAGCATGa < 2:29475/148‑1 (MQ=255) tGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCATCTGCCGGGCGGCTTCAACAGAGGCATGATAAGGAGCATGAat < 6:255992/148‑1 (MQ=255) gCCTTGCAGGGCAGATTTGCTGGCAGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCAt > 7:66336/1‑105 (MQ=255) gCCTTGCAGGGCAGATTTGCTGGCAGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCAt > 7:72640/1‑105 (MQ=255) gCCTTGCAGGGCAGATTTGCTGGCAGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCAt < 8:66336/105‑1 (MQ=255) gCCTTGCAGGGCAGATTTGCTGGCAGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCAt < 8:72640/105‑1 (MQ=255) gCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCTCCCGCCTTCGGGCATCTGCCGGGCGGCTTCAACAGAGGCATGATAAGGAGCATGAATATTg < 5:127912/146‑1 (MQ=255) cAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCATCTGCCGGGCGGCTTCAACAGAGGCATGATAAGGAGCATGAATATTGATTTTGaa < 1:130392/148‑1 (MQ=255) cAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCATCTGCCGGGCGGCTTCAACAGAGGCATGATAAGGAGCATGAATATTGATTTTGa > 2:267233/1‑147 (MQ=255) aGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCATCTGCCGGGCGGCTTCAACAGAGGCATGATAAGGAGCATGAATATTGATTTTGaaa < 3:282394/148‑1 (MQ=255) tttGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCATCTGCCGGGCGGCTTCAACAGAGGCATGATAAGGAGCATGAATATTGATTTTGAAAAgg > 7:124380/1‑148 (MQ=255) ggcggcATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCATCTGCCGGGCGGCTTCAACAGAGGCATGATAAGGAGCATGAATATTGATTTTGaa > 3:144416/1‑138 (MQ=255) ggcggcATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCATCTGCCGGGCGGCTTCAACAGAGGCATGATAAGGAGCATGAATATTGATTTTGaa < 4:144416/138‑1 (MQ=255) gcggcATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCATCTGCCGGGCGGCTTCAACAGAGGCATGATAAGGAGCATGAATATTGATTTTGAAAAGGCGATCaa > 2:180156/1‑148 (MQ=255) gcggcATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCATCTGCCGGGCGGCTTCAACAGAGGCATGATAAGGAGCATGAATATTGATTTTGAAAAGGCGATCaa > 3:54222/1‑148 (MQ=255) cggcATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCATCTGCCGGGCGGCTTCAACAGAGGCATGATAAGGAGCATGAATATTGATTTTGAAAAGGCGATCaa > 3:87486/1‑147 (MQ=255) cggcATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCATCTGACGGGCGGCTTCAACAGAGGCATGATAAGGAGCATGAATATTGATTTTGAAAAGGCGATCaa > 7:18401/1‑147 (MQ=255) | ATGCAACATATCGCGCATTGGCCCGTTGGCGGGATTAGCGTCGGTATCAATTGGCCCTGGCTGGACGACGTTAATGGTGATCCCACGCGGTCCAAAATCACGGGCCAGCCCGCGCGCCATGCCTTGCAGGGCAGATTTGCTGGCGGCATAAGCAGCCATGCCTGCAACAGGCATACGATCGCCATTCACGGAGCCGATGATTAAGATGCGCCCGCCTTCGGGCATCTGCCGGGCGGCTTCAACAGAGGCATGATAAGGAGCATGAATATTGATTTTGAAAAGGCGATCAA > NC_000913/4473469‑4473758 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |