New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	56 (0.830)	5 (0.080)	5/252	8.2	8.3%	coding (305/630 nt)	stfP	e14 prophage, uncharacterized protein
	?	NC_000913	= 1209602	61 (1.020)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGA  >  NC_000913/1207671‑1207943                                                                                                                                       |                                                                                                                                           cccggAGAAGGGGCGGCACGACCAGCTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTCTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAAc                                                                                                                                    <  2:594176/140‑1 (MQ=255) ccTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAAc                                                                                                                                    >  2:627675/1‑143 (MQ=255)     gagaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTaaa                                                                                                                                >  2:496923/1‑143 (MQ=255)      agaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAt                                                                                                                               <  2:273422/143‑1 (MQ=255)       gaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATg                                                                                                                              <  2:807193/143‑1 (MQ=255)         aGGGGCGGCACGACCAGTTACTGACCGCGCTCCGCGCGCTGCTGTTAAGCCGCAAGAATCCGGTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgca                                                                                                                            <  1:361848/143‑1 (MQ=255)          ggggCGGCACGAGGAGGTACTGACCGCACGTCGCGCGGTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATAGCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag                                                                                                                           <  2:138070/143‑1 (MQ=21)           gggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGACGGAGCAAAACTCAATgcagc                                                                                                                          >  1:378190/1‑143 (MQ=255)             gcggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa                                                                                                                        >  2:610614/1‑143 (MQ=255)             gcggcACGACCAGTGACTTACCGCACTCAGCACGATGCTGTTAGGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa                                                                                                                        <  2:590855/143‑1 (MQ=21)                          ttacttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGATAACCTTGGTGTGGGAGACGGAACCAAACTCAATGCAGCGACGGCTACAGTAgg                                                                                                           >  1:1122969/1‑143 (MQ=21)                           tacttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTAAATGCAGCAAAAGCTACATTAGGa                                                                                                          >  2:208329/1‑143 (MQ=255)                               tacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAACGCGGCCACGGCTACATGAGGACGCa                                                                                                      >  1:329651/1‑143 (MQ=255)                                acCGCACTTGGAGCGCTGCTGTTAGGCCGCAAGAATCCGTTTGGCGATAGCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAATCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAc                                                                                                     <  1:445040/143‑1 (MQ=25)                                   gCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTTAATACAGAAACGGCTACATGAGGaaggagcgg                                                                                                  >  1:995294/1‑135 (MQ=18)                                         cgcgcgCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAACCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAt                                                                                            <  2:299051/143‑1 (MQ=255)                                            gcgcTGCTGTTCAGCCGCAAGAGTCCGTGTGGCGAGGTCAAGTCGGATGGCACTGTGTGGTCGGCGCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc                                                                                         <  1:1008945/143‑1 (MQ=25)                                                tgctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCtata                                                                                     >  1:38492/1‑143 (MQ=255)                                                tgctgTTAAGCCGCAAGAATCCGTTTAGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATGAGGGCGCACCGGTTTCACAGCtatg                                                                                     >  1:39640/1‑142 (MQ=255)                                                   tgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCg                                                                                  <  2:489313/143‑1 (MQ=255)                                                    gTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCGATGCAGCGACGGCTACATTAGGACGCACCGGATTCATAGCTATACCgg                                                                                 >  2:47333/1‑143 (MQ=255)                                                      tgaGCCGCAGGAATCCGTGTGCCGATATCAAAGCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGtt                                                                               <  2:484010/141‑1 (MQ=255)                                                             cAAGAATCCGTTTGGCGATATCGAATCGGATGGAACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCGATGCAGCAACGGCTTTATTTGGACGCACCGGTTTCATAGCTATACCGGTTATGATtg                                                                        <  1:1015335/143‑1 (MQ=37)                                                                gagtctgTTGGGCGATATCAAATCGGTTGGCACTGTGCAAACTGCTCTCGAACACCTTGGGTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggtg                                                                     <  1:1082274/137‑1 (MQ=255)                                                                gAATCCGTTGGGCGCTACCCAATCGGATGGCACTCCGCAAACCGCTCTCGCAAACCTTGGCTTGCGAGACGGAGCCACCCCCAATGCAGCAACGGCTACATTAGGACGCACCGGTCTCATAGCTATACCGGTTATGATtggtg                                                                     <  2:984007/143‑1 (MQ=255)                                                                   tCCGTTTGGCGATACCAAATCGGATGGCACTTTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTa                                                                  <  2:100401/143‑1 (MQ=255)                                                                       tttGGCGGTATGAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCGAAACTCAAGGCGGCGACGGCTACATTAGGGCGCACCGGTGTCATAGCGATACCGGTTATGATTGGTGGTATTGa                                                              <  1:642843/143‑1 (MQ=37)                                                                       tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATAGCGGTTAACATTGCTGGTACTGa                                                              >  1:805943/1‑143 (MQ=38)                                                                       tttGGCGATATCAAAGCGGATGGCACTGTGCAAACGGCGCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                              <  2:244524/143‑1 (MQ=255)                                                                       ttgggCGATATCAAAGCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                              <  2:696227/140‑1 (MQ=255)                                                                             gATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTCTGATTGGTGGTATTGAGCAATc                                                        >  2:999340/1‑143 (MQ=255)                                                                              atatCAAATCGGACGCCACTGTGCAAGCGGCCCCCGAAACCCTCGGTGTTGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCa                                                       <  2:308894/143‑1 (MQ=255)                                                                               tatCAAAGCGGGTGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATccg                                                      <  1:778907/143‑3 (MQ=255)                                                                                atCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTGCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGt                                                     >  1:286346/1‑143 (MQ=255)                                                                                   aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAAAGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGGGGTATTGAGCAATCAGTAAt                                                  >  1:135298/1‑143 (MQ=255)                                                                                     aTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTCTTGAGCAACCCGTAATCa                                                >  1:663312/1‑143 (MQ=255)                                                                                           tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGt                                          >  1:918577/1‑143 (MQ=255)                                                                                           tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGATATGATTGGTGGTATTGAGCAATAAGTAATCATTCAGt                                          >  1:918586/1‑143 (MQ=255)                                                                                              cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCCATACCGGGTATGATTGGTGGTATGGAGCGATCAGTAATCATTCAGTggg                                       >  2:158611/1‑143 (MQ=255)                                                                                                    gCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGCGCAATCAGTAATCATTCAGTGGGGGTGGa                                 <  1:1018492/143‑1 (MQ=255)                                                                                                     cAAACGGCCCGCGAAAACCTTGGTTTGGGAGAAGTAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGaa                                <  2:817166/143‑1 (MQ=255)                                                                                                        aCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACAGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGCGTTGAGCAACCCGCAATCCGTCCGCGGGGGGGGAAAGc                             >  1:92568/1‑143 (MQ=255)                                                                                                          ggCTCTCGCAACCCTGGGTTTGGCAGAAGGAGCAAAACTCAAGGCAGCAACGGCTACATTAGGACGCACCGGTGTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCg                           <  2:110128/143‑1 (MQ=255)                                                                                                          ggCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCg                           <  2:360150/143‑1 (MQ=255)                                                                                                            ctctCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAACAACGGCTACACTAGGACGCACCGGTTTCATAGCTATACCGGTTATGCTTGGTGGTACTGAGCAATCAGTAATCATGCAGTGGGGGTCGAAAGCCGcc                         >  1:87869/1‑142 (MQ=255)                                                                                                             tctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCCTTCAGTGGGGGTGGAATGCCGcca                        >  1:655560/1‑141 (MQ=255)                                                                                                               tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGAAGGAACTGGGCGATCAGTAATCATGCAGTGGGGGTGGAATGCCGCaaaa                      >  1:402546/1‑143 (MQ=255)                                                                                                                cGAAAAGCTGGGGTGGGGAGAAGGGGCAAAACTGAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATGGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAg                     <  2:745498/143‑1 (MQ=255)                                                                                                                   aaaCGTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAt                  >  2:121466/1‑143 (MQ=255)                                                                                                                         tGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCct            >  2:279247/1‑143 (MQ=255)                                                                                                                               ggtagaAGGAGCACACCTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgggg      <  1:177105/140‑1 (MQ=255)                                                                                                                               gggAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgggg      <  2:729634/143‑1 (MQ=255)                                                                                                                               gggAGAAGGAGCAAAACGCAATGCAGCAGCGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTGTGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgggg      <  1:667288/143‑1 (MQ=255)                                                                                                                                 gagaAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAACAGCATCTGCCTCTgggggg    >  1:1006336/1‑143 (MQ=255)                                                                                                                                 gagaAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGATATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgggggg    >  1:942290/1‑143 (MQ=255)                                                                                                                                   gaAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGa  <  2:327063/143‑1 (MQ=255)                                                                                                                                       |                                                                                                                                           CCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGA  >  NC_000913/1207671‑1207943

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.