BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503–1979270	1979278	9–776	97 [0]	[0] 97	insB1–insA	insB1, insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	90 (1.290)	67/266	0.0	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
*	?	NC_000913	1979279 =	0 (0.000)	90 (1.290)	67/266	0.0	100%	intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

GGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGC  >  NC_000913/1979141‑1979418

ctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                                                         <  2:329528‑M2/5‑1 (MQ=255)

   tacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTc                                                                                                                                      >  1:474772‑M2/136‑143 (MQ=255)

      acttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTAATa                                                                                                                                   >  2:952448‑M2/133‑143 (MQ=255)

           tctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacgggggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcatttacttaacataaaagTATAAATCATacttct                                                                                                                              >  1:522123‑M2/128‑141 (MQ=255)

            ctaagatttctcccaaaccgacgcaactgtactcgtcactacacgcacatacaacggaggggagctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttg                                                                                                                             <  1:813219‑M2/17‑1 (MQ=255)

             taagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaaaggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAGACgtttgt                                                                                                                            >  1:444108‑M2/126‑143 (MQ=255)

              aagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATGAGTCGTACttttgtt                                                                                                                           >  2:151994‑M2/125‑143 (MQ=255)

                  tttttcctaaatcgacgcaactgtactcgtcactacaggcacatacaacggagggtggatgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                       <  2:1081049‑M2/23‑1 (MQ=255)

                  tttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                       <  2:526041‑M2/23‑1 (MQ=255)

                  tatgtcctaaatcgacgcagctgtactcgtaactacacgcacatacaacgggggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                       <  1:1186662‑M2/23‑1 (MQ=255)

                   ttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTGATACTTTTGTTTTggg                                                                                                                      >  2:1177612‑M2/120‑143 (MQ=255)

                    tttcctaaagcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATTATTCATACTTTTGTTTTGGgt                                                                                                                     <  1:159745‑M2/25‑1 (MQ=255)

                      tcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcactaatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTGTAAGTCATACTTTTGTTTTGGgtgt                                                                                                                   >  2:191159‑M2/117‑143 (MQ=255)

                      tcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGAgtgt                                                                                                                   >  2:1064375‑M2/117‑143 (MQ=255)

                        ctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTTGCTGtac                                                                                                                 >  1:951356‑M2/115‑142 (MQ=255)

                           aatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTc                                                                                                              >  1:1041517‑M2/112‑143 (MQ=255)

                            atcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTGCTACTTTTGTTTTGGGTGTATTTCa                                                                                                             >  2:1181020‑M2/111‑143 (MQ=255)

                                aggcaggtgtactcgtcactatacgcacagacaactgaggggggctgcgattttcaataatgcgtgatgcagaacacacaaaactctcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCt                                                                                                         <  1:806876‑M2/37‑1 (MQ=255)

                                acgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacatgattgTATAAGTCATACTTTTGGTTTGGGTGTATTTCAATCt                                                                                                         <  2:298323‑M2/37‑1 (MQ=255)

                                  gtgactgtcctcgtcacttcacgcacatacaacgtacgggtgctgcgatttgcaataatgcgtgatgcagatcacacaaaactctcaattacttaacataaattTATAATTCATACTTTTGTTTTGGGTGTATTTCAATCTGt                                                                                                       <  1:350582‑M2/39‑1 (MQ=255)

                                  gcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGt                                                                                                       >  1:974794‑M2/105‑143 (MQ=255)

                                  gcaactgtactcgacacgacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGt                                                                                                       <  2:636969‑M2/39‑1 (MQ=255)

                                   caactgtactcgtgactacacgcacatacgacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaactctcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGtt                                                                                                      <  1:869117‑M2/40‑1 (MQ=255)

                                    aactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTa                                                                                                     <  1:355972‑M2/41‑1 (MQ=255)

                                      ctgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaa                                                                                                   >  1:846498‑M2/101‑143 (MQ=255)

                                       tgtgctcttctctacacgcagttgcagcggatgtgtgctgcgattttcaataatgcgtgatgcagatcacacaaaactctcatttatttaacattaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaa                                                                                                  <  1:334104‑M2/44‑1 (MQ=255)

                                         tactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAg                                                                                                <  2:200289‑M2/46‑1 (MQ=255)

                                           ctcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGtt                                                                                              >  2:653501‑M2/96‑143 (MQ=255)

                                            tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTTTTAAAAAGttt                                                                                             >  2:662027‑M2/95‑143 (MQ=255)

                                            tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTCTGTTTTGGGtgtatttcaatctctcaacacgctt                                                                                             >  2:747791‑M2/95‑131 (MQ=255)

                                            tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAATCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt                                                                                             >  1:822288‑M2/95‑143 (MQ=255)

                                             cgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGtttt                                                                                            >  2:82594‑M2/94‑143 (MQ=255)

                                              gtcactacacgtacatactacggaggggggctgcgattttcaattgtgcatgatgcagatcacacaaaacacttaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttttt                                                                                           <  2:1007837‑M2/51‑1 (MQ=255)

                                               tcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTATATAGTTTTTc                                                                                          >  2:288530‑M2/92‑143 (MQ=255)

                                                cactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcg                                                                                         <  1:531363‑M2/53‑1 (MQ=255)

                                                cactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTAAATATGGTAAAAAGTTTTTcg                                                                                         >  1:48659‑M2/91‑143 (MQ=255)

                                                   tacacgcacatacaacggaagggggctgcgattttcaataatgcgtgatgcagatcacacaaaaaactcacttacttcacataaatgTATAAGTCATACTTTTTATTTGAGCGTATTTTAATCTGTTAtaaaatttttaactc                                                                                      >  1:39643‑M2/88‑138 (MQ=255)

                                                    acacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctac                                                                                     >  2:335900‑M2/87‑143 (MQ=255)

                                                     cacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacg                                                                                    <  2:1024339‑M2/58‑1 (MQ=255)

                                                      acgcacatacaacggaggggggcggcgatttgcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgc                                                                                   <  2:439450‑M2/59‑1 (MQ=255)

                                                        gcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGattatcactaagata                                                                                 >  2:634421‑M2/83‑138 (MQ=255)

                                                        gcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta                                                                                 <  2:952432‑M2/61‑1 (MQ=255)

                                                        gcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta                                                                                 <  2:838136‑M2/61‑1 (MQ=255)

                                                          acatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagc                                                                               >  2:1240224‑M2/81‑143 (MQ=255)

                                                            atacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaa                                                                             >  2:477991‑M2/79‑143 (MQ=255)

                                                              acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaagc                                                                           >  2:84925‑M2/77‑143 (MQ=255)

                                                                aacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTATTTCGCTACGCTAgcaagcaa                                                                         >  2:392622‑M2/75‑143 (MQ=255)

                                                                 acggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTAATACTTTTGTTTTGGGTGTATTTCAATCTGTTACAAAGTTTTTCGCTACGCTAGCAAGCaaa                                                                        >  2:648101‑M2/74‑143 (MQ=255)

                                                                   tgagggatgctgctattttcaataaagcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa                                                                      <  2:37104‑M2/72‑1 (MQ=255)

                                                                       ggtgtcttcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaa                                                                  <  2:10207‑M2/76‑1 (MQ=255)

                                                                         gggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataattgTATAAGTCATACTTTTGATTTGGGTGTATTTCAATATGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAAAGAAAc                                                                >  1:626544‑M2/66‑143 (MQ=255)

                                                                         gggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAc                                                                >  2:764127‑M2/66‑143 (MQ=255)

                                                                         gggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAc                                                                >  2:560773‑M2/66‑143 (MQ=255)

                                                                          ggctgcgattttcaagaacgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACa                                                               <  2:458798‑M2/79‑1 (MQ=255)

                                                                            ctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacatagatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAgg                                                             >  1:638784‑M2/63‑143 (MQ=255)

                                                                             tgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTtttcgctacgccagcaagcaatcgcgaaaccgta                                                            >  1:603774‑M2/62‑130 (MQ=255)

                                                                             tgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGa                                                            >  1:1013425‑M2/62‑143 (MQ=255)

                                                                                 attttcaataatgcgtgatgcagatcacacaaaacactcaataacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa                                                        >  2:154133‑M2/58‑143 (MQ=255)

                                                                                  ttttcaataaggcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTGGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat                                                       <  1:1125067‑M2/87‑1 (MQ=255)

                                                                                     tcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGCATAATCGa                                                    >  1:553960‑M2/54‑143 (MQ=255)

                                                                                       aataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa                                                  <  2:814735‑M2/92‑1 (MQ=255)

                                                                                        ataattagtgatgcagatcacacaaaagagtggattatttaacataattgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt                                                 <  1:12298‑M2/93‑1 (MQ=255)

                                                                                        ataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt                                                 >  2:457425‑M2/51‑143 (MQ=255)

                                                                                        ataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGATGTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAGAGGCATactcgcccc                                                 >  2:164336‑M2/51‑139 (MQ=255)

                                                                                            tgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa                                             >  1:936972‑M2/47‑143 (MQ=255)

                                                                                                 gatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTg                                        <  1:708419‑M2/102‑1 (MQ=255)

                                                                                                  atgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgc                                       <  1:82594‑M2/103‑1 (MQ=255)

                                                                                                  atgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTGTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgc                                       <  2:696599‑M2/103‑1 (MQ=255)

                                                                                                  atgcagatcacacaaaacactcaattacttaacagaaaggTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTTAAAAGCTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgc                                       <  2:540766‑M2/103‑1 (MQ=255)

                                                                                                          cacacaaaacactcaattacttaacataaatgTATAAGTCATGTTAATGTCGTAAGAGAATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTc                               <  2:1224566‑M2/111‑1 (MQ=255)

                                                                                                           acacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCa                              <  2:974794‑M2/112‑1 (MQ=255)

                                                                                                             acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaa                            >  2:689925‑M2/30‑143 (MQ=255)

                                                                                                             acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaa                            >  2:691914‑M2/30‑143 (MQ=255)

                                                                                                             acaaaacactcaattacttaacataaatgTATAAGTCATACTATAGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAACAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaa                            >  1:747027‑M2/30‑143 (MQ=255)

                                                                                                              caaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaaa                           >  2:831793‑M2/29‑143 (MQ=255)

                                                                                                               aaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGTTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAGGCAAAAATGCAACAGGAATAATTGAAAGGGGTTGTTGCGATCACTGAAAAt                          >  1:720987‑M2/28‑143 (MQ=255)

                                                                                                               aaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAGAt                          >  2:385551‑M2/28‑143 (MQ=255)

                                                                                                               aaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAAt                          >  2:1220503‑M2/28‑143 (MQ=255)

                                                                                                                  acactcaattacttaacataaatgTATAAGTCATGCTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAGAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTAACAATGAc                       >  2:842138‑M2/25‑143 (MQ=255)

                                                                                                                  acactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCCAAATAAc                       >  2:261131‑M2/25‑143 (MQ=255)

                                                                                                                  acactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGAACAGTCAAAATAAc                       >  1:802867‑M2/25‑143 (MQ=255)

                                                                                                                    actcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCGAGCAAAAATGAAACAGGAATACTCTAAATGGGATGTTGCGCACAGTCAAAATAACTc                     >  2:774281‑M2/23‑143 (MQ=255)

                                                                                                                     ctcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCa                    <  2:1041517‑M2/122‑1 (MQ=255)

                                                                                                                      tcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAc                   >  2:989715‑M2/21‑143 (MQ=255)

                                                                                                                      tcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAc                   >  2:148967‑M2/21‑143 (MQ=255)

                                                                                                                        aattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCg                 >  2:127879‑M2/19‑143 (MQ=255)

                                                                                                                        aattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTATATTTAAATCTGTTAAAAAGTTTCTCGGTACGCTAGCAAGCAAAAATGAAACAGTAATAATCGAAATGGCATGTTTGTCAAAGTCAacataacgtaacg                 >  1:1220708‑M2/19‑137 (MQ=255)

                                                                                                                             cttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaat            >  2:1125411‑M2/14‑143 (MQ=255)

                                                                                                                             cttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaat            >  2:307279‑M2/14‑143 (MQ=255)

                                                                                                                               taacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaataa          <  2:921174‑M2/132‑1 (MQ=255)

                                                                                                                                  cataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGtaaataataa       >  2:317407‑M2/9‑141 (MQ=255)

                                                                                                                                  cataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatca       >  2:157387‑M2/9‑143 (MQ=255)

                                                                                                                                   ataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcat      >  1:195683‑M2/8‑143 (MQ=255)

                                                                                                                                    taaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcatc     <  1:1206535‑M2/137‑1 (MQ=255)

                                                                                                                                     aaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt                                                                                             >  2:1101613‑M2/6‑54 (MQ=255)

                                                                                                                                     aaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt                                                                                             <  1:1101613‑M2/49‑1 (MQ=255)

                                                                                                                                       atgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGCAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAACTAACTcaccgtaaataatactgtgc  >  1:762202‑M2/4‑136 (MQ=255)

GGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGC  >  NC_000913/1979141‑1979418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`