New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	647423 =	63 (1.190)	3 (0.060)	3/478	NT	4.8%	coding (87/879 nt)	citG	2‑(5''‑triphosphoribosyl)‑3'‑dephosphocoenzyme‑A synthase
	?	NC_000913	647850 =	59 (1.150)					coding (186/552 nt)	citX	apo‑citrate lyase phosphoribosyl‑dephospho‑CoA transferase

ACATAGTCATCCTCTCGGGCGGTTATGGGATATCGATGTCCTGACGCCCGAAGGCGAAATTCTCTCCCGCCGCGACTATTCACTGCCGCCTCGCCGCTGCCTGTTGTGCGAACAAAGCGCAGCCGTCTGCGCGCGTGGAAAAACCCATCAACTGACCGATTTACTCAACCGCATGGAGGCACTGCTGAACGATGTCGATGCCTGCAACGTCAACTAAAACCACAAAGCTTGCGACGTCATTAATCGATGAGTACGCCCTGCTGGGCTGGCGCGCCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/647700‑647423 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccatgATTAAAAATTCGGCGTGTGACCTCGCTGTCTTTAATCGGCCCAGGCGCAACCACGGTAAAGGAGACCAGTGGAACAGGATGGCGCTTGAGCCAGACGTGTTGCCGTGCTTGCCTTTCATCCCGGCTGACGAGCAGCTCG  >  NC_000913/647850‑647988                                                                                                                                                                                                                                                                                                                                                                                                                                   acctcGTCATCCTCTCGGGCGGTTATGGGATATCGATTTCCTGCCGCCCGACGGCGAAATTCCCCCCCGCCGCCACTATTCACTGCCGCCTCGCCGCGGCCTGTTGTGCGAACAAAGCGCAGCCGTCTGCGCGCGTGGAAAAACCCATCAACTGACCGATTTACTCAACCGCATGGAGGCACTGCTGAACGATGTCGATGCCTGCAACGTCAACTAAAACCACAAAGCTTGCGACGTCATTAATCGATGAGTACGCCCTGCTGGGCTGGCGCGCC                                                                                                                                                <  1:310082/270‑1      GTCATCCTCTCGGGCGGTTATGGGATATCGATGTCCTGACGCCCGAAGGCGAAATTCTCACCCGCCGCGACTATTCACTGCCGCCTCGCCACTGCCTGTTGTGCGAACAAAGCGCAGCCGTCTGCGCGCGTGGAAAAACCCATCAACTGACCGATTTACTCAACCGCATGGAGGCACTGCTGAACGCTGTCGATGCCTGCAACGTCAACTAAAACAACAAAGCTTGCGACGTCATTAATCGATGAGTACGCCCTGCTGGGCTGGTGCGCCATt                                                                                                                                             >  1:448420/1‑272          TCCTCTCGGGCGGTTATGGGATATCGATGTCCTGACGCCCGAAGGCGAAATTCTCTCCCGCCGCGACTATTCACTGCCGCCTCGCCGCTGCCTGTTGTGCGAACAAAGCGCAGCCGTCTGCGCGCGTGGAAAAACCCATCAACTGACCGATTTACTCAACCGCATGGAGGCACTGCTGAACGATGTCGATGCCTGCAACGTCAACTAAAACCACAAAGCTTGCGACGTCATTAATCGATGAGTACGCCCTGCTGGGCTGGCGCcattctgactg                                                                                                                                        >  1:454684/1‑263                                                                                                                  AAAGCCCAGCCGGCTGCGCGCGTGCAAAACCCCATCACCTTACCGATTTACTCAACCGCATGGAGGCACTGCTGAACGATGTCGATGCCTGCAACGTCAACTAAAACCACAAAGCTTGCGACGTCATTAATCGATGAGTACGCCCTGCTGTGCTGGCGCGCCATGATTAAAAATTCGGCGTGTGACCTCGCTGTCTTTAATCGGCCCAGGCGCAACCACGGTAAAGGAGACCAGTGGAACAGGATGGCGCTTGAGCCAGACGTGTTGCCGTGCTT                               <  1:24823/275‑1                                                                                                                                     GCGTGG‑AAAACCCATCAACTGACCGATTTACTCAACCGCATGGAGGCACTGCTGAACGATGTCGATGCCTGCAACGTCAACTAAAACCACAAAGCTTGCGACGTCATTAATCGATGAGTACGCCCTGCTGGGCTGGCGCGCCATGATTAAAAATTCGGCGTGTGACCTCGCTGTCTTTAATCGGCCCAGGCGCAACCACGGTAAAGGAGACCAGTGGAACAGGATGGCGCTTGAGCCAGACGTGTTGCCGTGCTTGCCTTTCATCCCGGCTGCCG           >  2:334505/1‑275                                                                                                                                               ACCCATCAACTGACCGATTTACTCAACCGCATGGAGGCACTGCTGAACGATGTCGATGCCTGCAACGTCAACTAAAACCACAAAGCTTGCGACGTCATTAATCGATGAGTACGCCCTGCTGGGCTGGCGCGCCATGATTAAAAATTCGGCGTGTGACCTCGCTGTCTTTAATCGGCCCAGGCGCAACCACGGTAAAGGAGACCAGTGGAACAGGATGGCGCTTGAGCCAGACGTGTTGCCGTGCTTGCCTTTCATCCCGGCTGACGAGCAGCTCG  <  1:334506/275‑1                                                                                                                                                                                                                                                                                                                                                                                                                                   ACATAGTCATCCTCTCGGGCGGTTATGGGATATCGATGTCCTGACGCCCGAAGGCGAAATTCTCTCCCGCCGCGACTATTCACTGCCGCCTCGCCGCTGCCTGTTGTGCGAACAAAGCGCAGCCGTCTGCGCGCGTGGAAAAACCCATCAACTGACCGATTTACTCAACCGCATGGAGGCACTGCTGAACGATGTCGATGCCTGCAACGTCAACTAAAACCACAAAGCTTGCGACGTCATTAATCGATGAGTACGCCCTGCTGGGCTGGCGCGCCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/647700‑647423 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccatgATTAAAAATTCGGCGTGTGACCTCGCTGTCTTTAATCGGCCCAGGCGCAACCACGGTAAAGGAGACCAGTGGAACAGGATGGCGCTTGAGCCAGACGTGTTGCCGTGCTTGCCTTTCATCCCGGCTGACGAGCAGCTCG  >  NC_000913/647850‑647988

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.