New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2729462	32 (0.740)	3 (0.070)	3/266	6.3	9.8%	intergenic (‑20/+152)	gltW/rrsG	tRNA‑Glu/16S ribosomal RNA of rrnG operon
	?	NC_000913	4168348 =	25 (0.610)					intergenic (+149/‑23)	rrsB/gltT	16S ribosomal RNA of rrnB operon/tRNA‑Glu
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAA  >  NC_000913/4168210‑4168490                                                                                                                                           |                                                                                                                                               gCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAAcgc                                                                                                                                            >  1:16853/1‑143 (MQ=40)       tttGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATACGGCAGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAGTATCACGCACCGCGTGAtg                                                                                                                                      >  1:75704/1‑142 (MQ=255)              tGCTCACACCGATTGTCTGATAGACAGTGAAAAGCAATGCGTTGACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAAtt                                                                                                                               <  2:617581/143‑1 (MQ=255)                 tCACACAGATAGGCTGCTAAGAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTc                                                                                                                            <  2:714865/143‑1 (MQ=11)                   acacaGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGCAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCCCGCAACGCGGGATAAGCAATTTTCgt                                                                                                                          >  2:562646/1‑143 (MQ=255)                   acacaGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCgt                                                                                                                          >  1:294865/1‑143 (MQ=38)                   acacaGATTGTCTGATAGAAAGTGAAAAGCAACGCGTTTACGCGTTGGGAGAGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGCTAAGCAATCTTCgt                                                                                                                          >  1:398407/1‑143 (MQ=255)                       aGATTGTCTGATAGAAAGTGAAAAGCAACGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCATGATACGCaactctcaacccc                                                                                                                      >  1:403850/1‑132 (MQ=11)                               tGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATACGCACTTTGCGTGTGCCATTCGTc                                                                                                              >  1:214883/1‑143 (MQ=11)                               tGATAGAAAGTGAAAAGCAAGGCGATTACGCGTTGAGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGCAAATATCACGCAACGCGTGGTAAGCAATTTGTATGTCCCCACCGTc                                                                                                              >  2:100600/1‑143 (MQ=11)                                  tAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTag                                                                                                           >  2:195683/1‑143 (MQ=35)                                   ggAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTACTCATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTaga                                                                                                          <  1:656726/142‑1 (MQ=17)                                   aGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTaga                                                                                                          <  2:440489/143‑1 (MQ=33)                                     aaaGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAgg                                                                                                        >  2:663754/1‑143 (MQ=32)                                     aaaGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAgg                                                                                                        >  2:307645/1‑143 (MQ=32)                                     aaaGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAgg                                                                                                        >  2:481253/1‑143 (MQ=32)                                      aaGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGc                                                                                                       <  1:28581/143‑1 (MQ=32)                                      aaGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGc                                                                                                       <  2:503142/143‑1 (MQ=32)                                       aGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTATAGAGGcc                                                                                                      >  2:694248/1‑143 (MQ=17)                                         tGAAAAGCAAGGCGGCTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGGCGGTCGCTTACAAAAAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGGCCCCTTCGTCTAGAGGCCCa                                                                                                    <  2:387943/143‑1 (MQ=11)                                                                             tcgcagcaTAACGCCGTTCGCTTTCCATTACTGCAAGCTCACCCTACACGTATACATCCCGCAACGCGTGATACGCAATCTTCCTGCCCGCTTCGTCTAGAGGCCCAGCACACCGCCCTTTCACGGCGGTAACAGGGGTTCGa                                                                <  1:324456/136‑1 (MQ=1)                                                                                                    tcgtttgaTGAGAGCTCACCCTACACGAAACTATCGCGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGc                                         <  1:223696/136‑1 (MQ=1)                                                                                                            tgcaaGCTCAGTCTACAGGAACACATCACGCAACGTGGGATAAGCAATTTTCGTGCCCCCTTCGTCTAGAGGCCCGGGACGTCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTtgt                                 <  2:269004/140‑1 (MQ=1)                                                                                                              gaggcccACCCTAAACGAAAATATCACTCAACGCGTGATAAGCAAGTCTCGGGGCCCCTTCGTCGAGAGGCTCAGGATAGCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTgtga                               <  2:548741/137‑1 (MQ=1)                                                                                                                                  atatCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTaa           <  2:357812/143‑1 (MQ=32)                                                                                                                                     tCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCGAGGGGACGCCACTTGCTGGTTTGTGAGCGAAAGTCGGCGACCTTAatat        >  1:692303/1‑143 (MQ=12)                                                                                                                                        cGCAACCCGTGCTAAGCCTGTCTCGTGTCCTCGTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACTCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATAtctc     <  1:582836/143‑1 (MQ=11)                                                                                                                                           aaCGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGAGGTAACAGGGGTTCGAATCCCCTAGGGGGCGCCACTTGCTGGTTTGTGAGGGAGAGTCGCGGAGCTTacgttgtctaa  >  2:273235/1‑133 (MQ=11)                                                                                                                                           |                                                                                                                                               GCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAA  >  NC_000913/4168210‑4168490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.