| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2102943 | NA (NA) | 27 (0.620) | 23/282 | 1.0 | 46.6% | intergenic (‑32/+1) | insH1/wbbL | IS5 transposase and trans‑activator/pseudogene, lipopolysaccharide biosynthesis protein |
| ? | NC_000913 | 2103584 = | 31 (0.720) | coding (926/1119 nt) | wbbK | lipopolysaccharide biosynthesis protein | |||||
ATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAA > NC_000913/2103442‑2103726 | aagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcggaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccc > 2:586391‑M2/143‑143 (MQ=255)aagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccc > 1:300480‑M2/143‑143 (MQ=255) gaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTa > 2:602866‑M2/141‑143 (MQ=255) ttACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTaaa < 2:68986/143‑1 (MQ=255) gATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATggg > 2:288787/1‑143 (MQ=255) ttcgtggtctgacggcgcctcctgcggaagtgactgtcggcgaaggcaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGTAAATGGGa < 2:221779‑M2/13‑1 (MQ=255) tctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgacctcataacagggaattgttcgcgccttccctaatggaggcattt > 1:60679‑M2/129‑131 (MQ=255) aaaTGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGaaa < 1:254783/143‑1 (MQ=255) tGATATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCt < 2:466976/143‑1 (MQ=255) aaaTTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGa < 2:510398/143‑1 (MQ=255) aaTTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGAt < 2:588651/143‑1 (MQ=255) atgtGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATg < 2:118207/140‑1 (MQ=255) gacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGTAAATGGGAAATCTGATGc < 2:273862‑M2/23‑1 (MQ=255) tCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATAAAAAAAAGCTTTCTTTTCATAACTACCAAAAGTTTCTCTAGTAAAAGGGAAATCTGATGCTAATAc > 1:672668/1‑143 (MQ=255) ttactgctgaattcactgtcggtgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGTACATGGGAAATCTGATGCTAATAccc > 1:469177‑M2/113‑143 (MQ=255) atatCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACtt < 2:438133/143‑1 (MQ=255) gctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagcgacttgttcgcaccttccCTAGTCAATTGGAACTCTGATCCTTATACCCCcttc > 1:241082‑M2/108‑142 (MQ=255) ctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgccccttccCTAGTCAATGGGAAGTCTGATGAGAATACCCAATTAc > 1:189504‑M2/107‑143 (MQ=255) gaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGTAAATGCGAAATCTGGTGCTAATACCCACTTACCt > 1:26866‑M2/105‑143 (MQ=255) tgtcggcgaaggtaagttgatgactcatgatgaaccatgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCttt > 2:492595‑M2/97‑143 (MQ=255) ggTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTa < 2:559677/143‑1 (MQ=255) gTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAg < 1:699487/143‑1 (MQ=255) ttACCGTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATACCTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGc < 2:759160/143‑1 (MQ=255) tcaCCTTTGTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGc < 2:460586/141‑1 (MQ=255) cgcaggtaagttgatcactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTc < 1:22964‑M2/53‑1 (MQ=255) gaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCa < 2:249861‑M2/54‑1 (MQ=255) gaacgtaagttgatgactcatgatgaaccctgtcctatggctccagatcacaaacatgatctcatatcagggacttgttcgcaccttccCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCa < 2:403756‑M2/54‑1 (MQ=255) ttttttAATTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTTTTTTCATAACTACCATGAGTTTCTCTAGTAAATGGGAATTCTGATTCTAATACTCACTTACCTCGCTCTTTATCTTTAgc > 1:67564/1‑142 (MQ=255) gtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTGGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCGGACa > 2:14585‑M2/86‑143 (MQ=255) gAAGTCAATAATAAGTGTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACg < 1:583579/143‑1 (MQ=255) ttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttacCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCACATTAGCTTCCAACAAGGGc > 1:238106‑M2/81‑143 (MQ=255) atgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCACTCTTTAGCTTCAGACAACGGCAAt > 2:329811‑M2/78‑143 (MQ=255) aaataatAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAAt < 1:322293/142‑1 (MQ=255) ctaacATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAAc < 2:264145/143‑1 (MQ=255) cctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTCAcc > 1:579475‑M2/62‑143 (MQ=255) cccgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAAcc < 2:307751‑M2/82‑1 (MQ=255) tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTa < 1:492595‑M2/84‑1 (MQ=255) cATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGCCAACGGCAATCCCCATGTTTCTAACCTag > 1:730784/1‑143 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTaga < 2:300480‑M2/86‑1 (MQ=255) gTCATCGTTAGTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGCGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAgg < 1:195138/143‑1 (MQ=255) gggctccacatgacaaacatgatctcatatcacggacttgttcgcaccttccCTAGTAAATCGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGaa < 1:379907‑M2/91‑1 (MQ=255) aTCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATTCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGaa > 1:120807/1‑143 (MQ=255) aTCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGaa < 2:584934/143‑1 (MQ=255) cGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGaaaa < 1:197601/143‑1 (MQ=255) gtccagctcacaatcatgatctcatatcagggacttgttcgcaccttccCTAGTAAATGGGAAATCTGATGCTCATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAaaac < 1:35535‑M2/94‑1 (MQ=255) ctttctttTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAAtatta < 1:486092/143‑1 (MQ=255) ctttctttTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAAtatta > 1:605893/1‑143 (MQ=255) tcagatcagggacttgttcgcaccttccCTAGGAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAAtattat < 2:495172‑M2/115‑1 (MQ=255) ttCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAAt < 1:633780/143‑1 (MQ=255) ttCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAAt > 2:102816/1‑143 (MQ=255) ggacttgttcgcaccttccCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGAt > 2:302551‑M2/20‑143 (MQ=255) ttgttcgcaccttccCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGACAACAAACTATATCTGAAATATTATAACAATGATCGAt > 1:577382‑M2/16‑143 (MQ=255) ttgttcgcaccttccCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGAt > 1:481572‑M2/16‑143 (MQ=255) cTAACAAGAGTTTCTCTAGTAACTGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGAt < 2:198440/143‑1 (MQ=255) agagTTTCTCTAGTAAATGGGAAATCTGATGCTAATCCCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTCTCTAACCTCGACGGACAACAAACTATATCTCACCTCTTATAACCATGATCGATTTTTTc > 1:230990/1‑143 (MQ=255) agTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCtt < 1:213363/143‑1 (MQ=255) ctttCTCTATTAAATGAGAAATCTCATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCttt < 1:599604/142‑1 (MQ=255) tctAGTAAATGGGAAATCTGATGCTAATACCCACGTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAACCACACTGTAGCCGGAATAGTATAACAATGCTCGATTTTTTCTTTATCCa > 2:78260/1‑143 (MQ=255) ctAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAATCTAGAGGGAAAAAAAACTATAGCTGAAATATTATAACCATGTTCCAGTTTTTCTTTAtaaaa > 2:380356/1‑139 (MQ=255) | ATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAA > NC_000913/2103442‑2103726 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |