New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1293032 =3 (0.070)52 (1.200) 41/282 0.1 94.5% intergenic (‑110/‑495) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
?NC_000913 = 1979270 NA (NA)intergenic (‑55/‑483) insA/uspC IS1 repressor TnpA/universal stress protein

Only 100 of 104 total aligned reads displayed.

GATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCT  >  NC_000913/1292890‑1293173
                                                                                                                                              |                                                                                                                                             
gcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacct                                                                                                                                               <  1:317087‑M1/1‑1 (MQ=255)
gcgcgggtgtcccgcggtgcttgtgccgtgactctccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatctaaccctaattcagtaagttggcagcatcacct                                                                                                                                               >  1:462610‑M1/143‑143 (MQ=255)
 aTGTTGTTCCGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGGGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTAtttt                                                                                                                                              <  1:495218/143‑1 (MQ=255)
  tggtgttCAGAATTTTAGGGGTGTGGTTTTTTGTTGTAATCTTAGACTTTTTTTGGGGTGGTTTGCTAAAGTTAGGTGAGGGCCTTATTCTCATTTGTTCTATAGCCAGGAATGTAATGAATTCAAAATTGTTCTTTATTTtg                                                                                                                                             <  1:91223/140‑1 (MQ=255)
    ttgttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTtgtg                                                                                                                                           >  2:227745/1‑143 (MQ=255)
          aggagtgtaagtgctTCGCTCATTGTTGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggt                                                                                                                                     >  2:669478‑M2/8‑140 (MQ=255)
           cggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccctacagaacgaaatcagtaagttggccgcatcaccTTGTGCCGCCaa                                                                                                                                    <  2:241442‑M1/12‑1 (MQ=255)
              cggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcatcatcaccTTGTGCCGCCaataa                                                                                                                                 >  2:436293‑M1/129‑143 (MQ=255)
                    ttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTgccgcccataactctct                                                                                                                           <  2:259763‑M1/21‑7 (MQ=255)
                    ttttgccgttacgcaccaccccgtcagtagctgaacaggagagacagctgatagaaacagaagccactggagcaactcaaaaacaccataatacactaaatcaataagatagcagcaacacaTAGAGCAGCCAAGAAATATCt                                                                                                                           <  1:594611‑M1/21‑1 (MQ=255)
                      gCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaac                                                                                                                         <  2:555672‑M2/143‑16 (MQ=255)
                        ttCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaactt                                                                                                                       <  1:586174‑M2/143‑18 (MQ=255)
                          cgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCAt                                                                                                                     <  1:235831‑M1/27‑1 (MQ=255)
                            ttacgcaccaccccgtcagtagctgcacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccgtcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATaa                                                                                                                   <  1:613831‑M1/29‑1 (MQ=255)
                            ttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactgaagcacctcaaaaacaccatcatacactaaatcagtaagatggcagcatcaccATGTGCCGCCAATAAATATCTTTTCATaa                                                                                                                   <  1:149216‑M1/29‑1 (MQ=255)
                              cATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgat                                                                                                                 <  2:159549‑M2/143‑24 (MQ=255)
                              acgcaccaccccatcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATaaaa                                                                                                                 >  2:298426‑M1/113‑143 (MQ=255)
                                ttGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatag                                                                                                               <  1:190114‑M2/143‑26 (MQ=255)
                                gcaccaacccctcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAAtt                                                                                                               >  1:353251‑M1/111‑143 (MQ=255)
                                 caccaccccgccagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTa                                                                                                              >  2:205570‑M1/110‑143 (MQ=255)
                                 caccaccacataattaactgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTa                                                                                                              >  2:205571‑M1/110‑143 (MQ=255)
                                    caccccgtcagtagctgaacaggagggacagctgatagacacacaagccactggagcacctcaaaaacaccatcctacactaaatcagcaagttggcagcatcaccTTGTGCCGCCAATAACTATCTTTTCAtaaaatcacgc                                                                                                           <  1:55686‑M1/37‑6 (MQ=255)
                                      taATCTCAAACTTATATTGAGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgtttt                                                                                                         >  2:59057‑M2/1‑112 (MQ=255)
                                       cccgtcagtagctgaacaggagggccagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGa                                                                                                        <  2:577216‑M1/40‑1 (MQ=255)
                                             aaaCTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttca                                                                                                  >  2:603866‑M2/1‑105 (MQ=255)
                                               aCTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcaga                                                                                                <  2:65976‑M2/143‑41 (MQ=255)
                                                  tataTTGGGGTGGTTTGCTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataa                                                                                             >  2:129927‑M2/1‑100 (MQ=255)
                                                  ctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGc                                                                                             <  2:319820‑M1/51‑1 (MQ=255)
                                                   tgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAAGATCTTTTCATAAAATGAGCCAGAAAAGACGGGGCa                                                                                            <  1:19099‑M1/52‑1 (MQ=255)
                                                   atagTGGGGTGGTGTGTTGAGGTAAGAATAGAGCCGTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAGTTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataat                                                                                            >  1:703272‑M2/1‑99 (MQ=255)
                                                     atTGGGGTGGTTTGGTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgc                                                                                          >  1:616968‑M2/1‑97 (MQ=255)
                                                        ggggTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccg                                                                                       >  2:661267‑M2/1‑94 (MQ=255)
                                                         gggTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttccgataatgcccga                                                                                      <  1:31813‑M2/143‑51 (MQ=255)
                                                          gagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGcc                                                                                     <  2:716340‑M1/59‑1 (MQ=255)
                                                          gagggacagctgatagaaacagaagccactggagcacctcaaaaacaccagcatacactaaatcagtaagttggcagcatccccACGCCCCGCCAATAAATATCTCTTCATCAAATTAGCCAGAAAAGACGCGGCATACAGcc                                                                                     <  1:265429‑M1/59‑1 (MQ=255)
                                                              gtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactcaaactgcatctagtggtgttatgttcagataatgcccgatgact                                                                                 <  1:156176‑M2/143‑56 (MQ=255)
                                                               acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATATAATTAACCAGAAAAGACGCGGCATATAAccctctt                                                                                <  1:720930‑M1/64‑4 (MQ=255)
                                                                ttgttgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt                                                                               <  1:462400‑M2/143‑58 (MQ=255)
                                                                  gttgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgt                                                                             >  1:476635‑M2/1‑84 (MQ=255)
                                                                  gttgAGGTAAGAATAGAGCATTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATGTTGTGCCGggtaatgactccaactcattgatagtgttttatgttcagataatgcccgatgactttgt                                                                             >  2:749048‑M2/1‑84 (MQ=255)
                                                                  gctgatagaaacagaagccactggagcgcctcaaaaacaccatcatacactaaatcagtaagttggcagcatcatcTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTac                                                                             >  1:646052‑M1/77‑143 (MQ=255)
                                                                   ctgatagaaacagaagccagtggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTaca                                                                            <  2:656315‑M1/68‑1 (MQ=255)
                                                                      atagaaacagaagccactggagcacctcacaaacaccatcatacactaaatcagtaagttggcagaaacaccTTGTGCCGCCAATAAATAGCCTTTCACAAAATTAGCCAGAAAAGACGCGGAAGATAGCCCCATATACacca                                                                         <  1:380993‑M1/71‑2 (MQ=255)
                                                                       tagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACCCGGCATATAGCCCTATTTACACCga                                                                        <  1:637654‑M1/72‑1 (MQ=255)
                                                                        agaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCgat                                                                       <  1:486380‑M1/73‑1 (MQ=255)
                                                                         gaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCgatg                                                                      <  2:335088‑M1/74‑1 (MQ=255)
                                                                          aataagAGAGCCTTACACGCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagc                                                                     >  2:465629‑M2/1‑76 (MQ=255)
                                                                           ataataGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAAGTGTTCTTTATTTTGTGCCGggtaatgactccaacttatcgatagtgttttatgttcagataatgcccgatgactttgtcatgcagct                                                                    <  1:727051‑M2/143‑69 (MQ=255)
                                                                            taataGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctc                                                                   <  2:536393‑M2/143‑70 (MQ=255)
                                                                            taataGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactgtgtcatgcagctc                                                                   <  2:120630‑M2/143‑70 (MQ=255)
                                                                              agaagccactggagcacctcaaaaacaccatcatacactacatcagtaagttggcagcatcaccTTGTGCAACCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCATATTTACACCGATGGTTTc                                                                 <  2:707824‑M1/79‑1 (MQ=255)
                                                                               gaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCg                                                                >  2:615023‑M1/64‑143 (MQ=255)
                                                                                  agCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgtgcagataatgcccgatgcctttgtcatgcagctccaccga                                                             <  2:136663‑M2/143‑76 (MQ=255)
                                                                                     cTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCGTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattt                                                          <  1:18329‑M2/143‑79 (MQ=255)
                                                                                       tcgatcacgtcaaatacaccatcctacaccaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAACTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGt                                                        >  1:601558‑M1/56‑143 (MQ=255)
                                                                                       tAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg                                                        >  2:690769‑M2/1‑63 (MQ=255)
                                                                                        ggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTg                                                       >  2:601745‑M1/55‑143 (MQ=255)
                                                                                        aaaTTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttga                                                       >  2:14414‑M2/1‑62 (MQ=255)
                                                                                         gagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGa                                                      >  2:235831‑M1/54‑143 (MQ=255)
                                                                                           gcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAgg                                                    <  2:415272‑M1/92‑1 (MQ=255)
                                                                                             acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACCCCGATGATTTCGCAGCACGTGAGGtt                                                  <  1:5907‑M1/94‑1 (MQ=255)
                                                                                               ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaa                                                <  1:690416‑M1/96‑1 (MQ=255)
                                                                                                ttGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgaca                                               >  2:320057‑M2/1‑54 (MQ=255)
                                                                                                tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGCTTTCGCAGCAAGGGAGGTTaaa                                               <  1:611408‑M1/97‑1 (MQ=255)
                                                                                                tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGCGCGGTtaac                                               <  1:197544‑M1/97‑2 (MQ=255)
                                                                                                  aaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCAAGTGAGGctaaacc                                             <  1:403971‑M1/99‑3 (MQ=255)
                                                                                                     aaccccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTc                                          >  1:434340‑M1/42‑143 (MQ=255)
                                                                                                     aacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTc                                          >  2:674831‑M1/42‑143 (MQ=255)
                                                                                                      aaTAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgact                                         >  2:61017‑M2/1‑48 (MQ=255)
                                                                                                         aGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttcc                                      >  2:361061‑M2/1‑45 (MQ=255)
                                                                                                          gCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgaagctccaccgagtttgagaacgacagcgccttccg                                     <  1:238198‑M2/143‑100 (MQ=255)
                                                                                                          catcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGAt                                     <  2:463180‑M1/107‑1 (MQ=255)
                                                                                                           ccAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttgcgt                                    <  1:511979‑M2/143‑101 (MQ=255)
                                                                                                           ccAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccga                                                                                      <  2:272079‑M2/93‑51 (MQ=255)
                                                                                                           ccAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccga                                                                                      >  1:272079‑M2/1‑43 (MQ=255)
                                                                                                            tcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTc                                   >  1:542939‑M1/35‑143 (MQ=255)
                                                                                                              atactctaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCAt                                 >  1:89463‑M1/33‑143 (MQ=255)
                                                                                                                acactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGt                               >  2:52003‑M1/31‑143 (MQ=255)
                                                                                                                  tGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagcc                             >  2:1997‑M2/1‑36 (MQ=255)
                                                                                                                  actaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTcatggca                             <  2:64514‑M1/115‑4 (MQ=255)
                                                                                                                  actaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCACTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTACTGATTCAtgtaa                             <  1:52916‑M1/115‑3 (MQ=255)
                                                                                                                    tAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgt                           >  1:110017‑M2/1‑34 (MQ=255)
                                                                                                                     aaGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtg                          <  2:659898‑M2/143‑111 (MQ=255)
                                                                                                                      aatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACAtt                         <  2:707188‑M1/119‑1 (MQ=255)
                                                                                                                      aGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagcacgacagcgacttccgtcccagccgtgc                         <  1:244261‑M2/143‑112 (MQ=255)
                                                                                                                      aGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgc                         >  2:10412‑M2/1‑32 (MQ=255)
                                                                                                                      aGGAATTCAAAATTGTTCTTGATTTTGTGCCGgataatgactccaacttattgataatgttttatgttcagacaatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgc                         >  1:324336‑M2/1‑32 (MQ=255)
                                                                                                                           gtaagttggcagcatcaccTTGTGCCGCCAATAAAGATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATg                    >  1:591634‑M1/20‑143 (MQ=255)
                                                                                                                              taaatTGTTCTTTATGTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgct                 >  1:431458‑M2/2‑24 (MQ=255)
                                                                                                                                catTGTGCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgc               >  1:515834‑M2/2‑22 (MQ=255)
                                                                                                                                      gcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATc         >  1:155580‑M1/9‑143 (MQ=255)
                                                                                                                                        tttATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcctgcagctccaccgcttttgagaccgacagcggcttccgtcccagccgctccagctgctgccccagcgc       <  1:416400‑M2/143‑130 (MQ=255)
                                                                                                                                         tcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTa      >  2:690416‑M1/6‑143 (MQ=255)
                                                                                                                                           gttttgTGCCGggtaatgactccgacttattgatagtgttttatgtgcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcag    >  1:311053‑M2/2‑11 (MQ=255)
                                                                                                                                           accTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAgg    >  2:613831‑M1/4‑143 (MQ=255)
                                                                                                                                           accTTGTGAGGCCAAGCAAGATCTTTTCATAAACTTAGCCAGAAAAGCGGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAgg    >  1:220706‑M1/4‑143 (MQ=255)
                                                                                                                                           aTTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcag    >  2:330327‑M2/1‑11 (MQ=255)
                                                                                                                                           aTTTTGTCCCGggtaatgcctccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtcccaggtgctgcctcagattcag    >  1:519600‑M2/1‑11 (MQ=255)
                                                                                                                                           aTTTGTTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcag    >  1:353671‑M2/1‑11 (MQ=255)
                                                                                                                                             cTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTATCTGGGGAGATTATCGTCGgcg  <  1:484835‑M1/142‑2 (MQ=255)
                                                                                                                                              |                                                                                                                                             
GATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCT  >  NC_000913/1292890‑1293173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.