| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 3 (0.070) | 21 (0.550) | 20/250 | 1.0 | 86.3% | coding (305/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | = 1209602 | 4 (0.100) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
AGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAT‑GGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGA > NC_000913/1207669‑1207947 | aGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAT‑GGCACTGTGCAAACGGCTCTCGAAAACCTTGGTCTGGGAGAAGGctctgc > 2:618191‑M1/1‑137 (MQ=255) gttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaaa < 2:654380‑M1/22‑1 (MQ=255) ttgttgagctgggttctggtcatttgttgatacgcgtacatagccaataagcgtgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaaaa > 1:531716‑M1/121‑143 (MQ=255) tctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatctccatggtaaaagcaggaatgatgccatttgcttgttatttcttcatcttcataaacgTTGGTTTGGGAGAAGGAGCAAACCTCAATg < 1:310386‑M1/30‑1 (MQ=255) tctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGGGAAGGCGCACAACTCAata < 1:708585‑M1/30‑2 (MQ=255) aaGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAT‑GGCACTGTGCAAACGGCTCTCGAACACCTTGGTTTGGGAGAAGGctctgcattacctgt > 2:30372‑M1/1‑128 (MQ=255) aaGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAT‑GGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgt < 2:436807‑M1/143‑16 (MQ=255) ctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgc > 1:390453‑M1/113‑143 (MQ=255) ggggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGCTATCAAATCGGAT‑GGCACCGTGCACACGGCCCTCGAAAACGGTGGCTTGGGAGAAGGctctgcattacctggtg > 1:657288‑M1/1‑126 (MQ=255) gggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCGAATCGGAT‑GGCAGTGTGCAAACGGCTCTCGAAAAACTTGGTTTGGGAGAAGGctctgcaatacaaggtga > 1:80405‑M1/1‑125 (MQ=255) ttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgGTGGTTTGGGAGAAGGAGCACAACTCAAtgcagcac < 1:428248‑M1/36‑2 (MQ=255) tctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAAc > 2:579286‑M1/107‑143 (MQ=255) tcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAT‑GGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg < 1:137205/142‑1 (MQ=255) gcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAT‑GGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcc < 1:676285‑M1/143‑24 (MQ=255) ggtcatttgttgatacgcgtacatagccaataagcctgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattctcataaccgTGGGTTTGGGAGCAGGAGCTaacctcaatgcggccacagc < 2:673057‑M1/40‑10 (MQ=255) aCGACCAGTTACTTACCGCACTGCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAT‑GGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccg > 1:667870‑M1/1‑118 (MQ=255) ttgttgctacgcgtacatagccaataagcatgttacatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAtt > 1:521828‑M1/98‑143 (MQ=255) gtggagatacgcgtacatagccaataagcatgttaaagcctcctggtagaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAtt > 1:659148‑M1/98‑143 (MQ=255) ggtactgaccgCACTCCGCGCTCGGCGGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAT‑GGCGCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgt < 1:44151‑M1/141‑33 (MQ=255) tgacttaccgCACTGCGCGCGCTGGCGTTAGGCCGGAAGGAGCCGTTTGGCGATATCCAATCGGAT‑GGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtg < 2:315657‑M1/141‑34 (MQ=255) ttgatacgcgtacatagccaatgagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAgg > 1:82536‑M1/95‑143 (MQ=255) cgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGTAGGAGCAAAACTCAACGCAGCAACGGCTACGTTAAGACGcacga < 1:20234‑M1/57‑3 (MQ=255) cgtacagagccaataagcatgttaaatccccctggtaagagcaggaatgatgccatttgcttgttatttcttcgttttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCg > 1:323462‑M1/87‑143 (MQ=255) gtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgcgatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGATACATTAGGACGCACCgg < 1:763354‑M1/58‑1 (MQ=255) acatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGtt < 2:681005‑M1/60‑1 (MQ=255) tCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAT‑GGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggagccctggccttcagccactc > 1:566747‑M1/1‑96 (MQ=255) cgcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGGCGATG‑ATTATCGTCGCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgc < 2:173344‑M1/143‑51 (MQ=255) tgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAT‑GGCACGGTGCAAACGGCTCTCGAAAACCTTGGTGTGGGAGAAGGctctgcattacctgttggtgtcccggttctggggggtgcagacacaccgccaacaggc > 1:486195‑M1/1‑85 (MQ=255) cgtttaatccccctggtagatgcaggcatgatgccagttgcttgttatttcttcattttcataaacgTTGGTTGGTGAGAAGGAGCAAATCTCAATGCAGCAACGGCTACATTAGGACGCCCCGGTTTCATAGCTATACCGGt > 1:629753‑M1/68‑143 (MQ=255) ttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCACTGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATaccggcta < 2:18014‑M1/78‑4 (MQ=255) ttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGCAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTa < 2:382382‑M1/78‑1 (MQ=255) gCAAGAATCCGTTTGGCGATATCAAATCGGAT‑GGCCCTGTGCAAACGGCTCTCGAAAACCTCGGTGTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAGTCGGCCGCACCGGTGTCATAGCCATACCGGttgagctt > 1:175786/1‑137 (MQ=25) gCAAGAATCCGTTTGGCGATATCAAATCGGAT‑GGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaa < 2:467852‑M1/143‑68 (MQ=255) atccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAt < 2:700610‑M1/82‑1 (MQ=255) ccacactcggtgtggcgatgtcaacTCGGAT‑GGCACTGTGCAAACGGCTCTCGAAACCCTTGGTTCGGGAGAAGGctctgcattacctgttggtgtcgcggttccgtggccttcagccactccgccaacaggctggctgaaat < 1:258299‑M1/131‑69 (MQ=255) ccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattgtcataaacgTTTGTTTGGGAGAAGGAGCAAAACTCAATGCCGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggt > 2:209586‑M1/58‑143 (MQ=255) aaTCCGTTTGGCGAGATCAAATCGGAT‑GGCACTGTGCAAACGGCTCTCGAAACCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaa < 1:57704‑M1/143‑73 (MQ=255) ctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggtgg < 2:441480‑M1/88‑1 (MQ=255) taaaagcaagaatgattccatttgcttgttatttcttcattttcatcaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTAtt > 2:208982‑M1/52‑143 (MQ=255) aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTTGTATTGa > 1:681005‑M1/50‑143 (MQ=255) gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAGGGCGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGCTTGGTGGTATTGAGCa < 2:92940‑M1/97‑1 (MQ=255) gATATCAAATCGGAT‑GGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgcttt < 2:220220‑M1/143‑85 (MQ=255) aaaTCGGAT‑GGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgc > 2:461568‑M1/1‑53 (MQ=255) catttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCAtt < 2:627175‑M1/110‑1 (MQ=255) ttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGgggg < 1:670998‑M1/117‑1 (MQ=255) ttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATCCAGtgggggg < 2:334701‑M1/120‑2 (MQ=255) atttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTCTTGAGCAATCAGTAATCATTCAGTGGGGGTgg < 1:166827‑M1/122‑1 (MQ=255) tccttattttcataaatgTTGGGTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAAt > 1:109555‑M1/19‑143 (MQ=255) ttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGc < 2:758273‑M1/127‑1 (MQ=255) gCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaa < 2:692739‑M1/143‑115 (MQ=255) tctcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagcatacccggaactggcaaagg > 2:391431‑M1/1‑27 (MQ=255) tctcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaagg < 2:667870‑M1/143‑117 (MQ=255) tcttcaagtttaggttGGGTGAAGGAGCTAAACTTATTGCAGCTACGGCTACATTAGGACGCACCGGTTTGTTAGCTTTTCCGTTGATGATTGGTTGTATTGAGCAATCATTAATCATTCAGTGGGGGTGGAATGCCGCaaaa < 1:292652/129‑1 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgcaggatacccggaactggcaaaggct > 2:307084‑M1/1‑25 (MQ=255) ataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGCTATGATTGGTGGTATTCAACAATCAGTAGTCATTCAGTGGGGGTGGAATGCAGCACAaga < 1:205309‑M1/136‑2 (MQ=255) aaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCCGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAt < 2:664636‑M1/138‑1 (MQ=255) GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATCAACAGTTGCGTTGAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCGCTgggg < 2:174055‑M1/143‑1 (MQ=255) gagaAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattg > 2:645548‑M1/1‑7 (MQ=255) gaAGGctctgcattccctcttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaatcaactgcc < 1:710945‑M1/143‑139 (MQ=255) gctcggcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctgat < 1:645548‑M1/143‑143 (MQ=255) GAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGa < 2:608167‑M1/143‑1 (MQ=255) | AGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAT‑GGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGA > NC_000913/1207669‑1207947 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |