New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1279401 =	40 (0.920)	4 (0.100)	4/272	5.8	9.6%	intergenic (+53/‑463)	narK/narG	nitrate/nitrite transporter/nitrate reductase 1, alpha subunit
	?	NC_000913	1279431 =	37 (0.890)					intergenic (+83/‑433)	narK/narG	nitrate/nitrite transporter/nitrate reductase 1, alpha subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAGTATGTTGTAACTAAATGACGCATAAAAAAAGCGCGACATCATGCCGCGCAAAGGATAATCAAATATTTTACTCTATATAATTCGGTTTACAGGAAGGCGGCAAGTGAATGAATCCCAGGAGCTTACTAAAGTAAGTGACTGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1279546‑1279401 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgggATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGAT  >  NC_000913/1279431‑1279572                                                                                                                                                                                                                                                                                                  TAGTATGTTGTAACTAAATGACGCATAAAAAAAGCGCGACATCATGCCGCGCAAAGGATAATCAAATATTTTACTCTATATAATTCGGTTTACAGGAAGGCGGCAAGTGAATGAATCCCAGGAGCTTACTAAAGTAAGTGACT                                                                                                                                                   <  1:420746/143‑1   GTATGTTGTAACTAAATGACGCATAAAAAAAGCGCGACATCGTGCCGCATAAAACCAAATCAAATAGTTTACTCTATATAATTCGGTTTACAGGAAGGCGGCAAGTGAATGAATCCCAGGAGCTTACTAAAGTAAGTGACTGG                                                                                                                                                 <  2:755697/143‑1      tgcTGTAACTAAATGACGCATAAAAAAAGCGCGGCATCATGCCGCGCAAAGGATAATCAAATATTTTACTCTATATAATTCGGTTTACAGGAAGGCGGCAAGTGAATGAATCCCAGGAGCTTACTAAAGTAATTGACTGGGgg                                                                                                                                              <  1:132800/140‑3                                                                                                      GGCAAGTGAATGAATCCCAGGAGCTTACTAAAGTAAGTGACTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCA                                              >  1:650831/1‑143                                                                                                            TGAATGAATCCCAGGAGCTTACTAAAGTAAGTGACTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGT                                        >  2:310779/1‑143                                                                                                               ATGAATCCCAGGAGCTTACTAAAGTAAGTGACTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTAC                                     >  2:192260/1‑143                                                                                                                    TCCCAGGAGCTTACTAAAGTAAGTGACTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACgagac                                >  2:21272/1‑138                                                                                                                                              CTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCC      <  2:91362/143‑1                                                                                                                                               TGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTTATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCG     >  1:616688/1‑143                                                                                                                                                 GGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGA   <  1:538182/143‑1                                                                                                                                                  GATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGAT  >  1:353284/1‑143                                                                                                                                                  GATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTCACAACATACTAATGTTATATGGTTTATTTCGCCGGAT  >  1:315594/1‑143                                                                                                                                                                                                                                                                                                  TAGTATGTTGTAACTAAATGACGCATAAAAAAAGCGCGACATCATGCCGCGCAAAGGATAATCAAATATTTTACTCTATATAATTCGGTTTACAGGAAGGCGGCAAGTGAATGAATCCCAGGAGCTTACTAAAGTAAGTGACTGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1279546‑1279401 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgggATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGAT  >  NC_000913/1279431‑1279572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.