| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1049778 = | 152 (0.780) | 18 (0.090) | 3/478 | NT | 14.9% | intergenic (‑34/‑55) | gfcA/insA | O‑antigen capsule production threonine‑rich inner membrane protein/IS1 repressor TnpA |
| ? | NC_000913 | = 4507640 | 53 (0.270) | coding (979/1152 nt) | insI1 | IS30 transposase | |||||
TCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGTCTGGCCAGTTCCATTCCTCTGTCCCATGTCAGTGATTTTCTGAGTTCTGACGGTAAACTCAGGAATTTGTCGGTAAGAGCCTGATTTACTGAGACAGAATCTTTGCCCCTGAGTCTAAGGATGATCGTATAACGTGATTTTCGGTCTACAAGTGTGGCTATATGAGAGTTTTTTGTACCTGAGACTAAATCGCCCTCCCAA > NC_000913/4507369‑4507920 | tctcCTATAACACCACAACAAATCGAAACACGTAAGCTGAGGAAAAAGCTACAACGGATTGAATTGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACACCTTACAATTATCTCTTTCGGTTTTTTGAACTTCAGCGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATATAGTTAATGTTGAGTATATTGGGCACGCGAGGTCTTTTTAGGCAAGTACTGCCGATTTAGTCCATTTGTGTTCTCATTTGTTccc > 1:1698740/1‑282 (MQ=18)tctcCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTccc > 1:569306/1‑282 (MQ=255) tcCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCg < 2:1774386/282‑1 (MQ=255) acacCAGAACAAATCTAAAAACGGAAGCTGAGGAAAAAGGTACAACGGATTGAAAAGTAGAATGAAATATTCAAAAGGCTACTGTAGGTTCTATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGGCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAATTAATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGGCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCaa < 1:1031671/282‑1 (MQ=17) acacCAGAACAAATCGAAATCCGGAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCACTGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCGAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCaa < 2:1692842/282‑1 (MQ=255) acacCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATTTTGGGCAAGAGATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCAATTTGTGTTCTCATTTGTTCCTCGCTGc > 2:699839/1‑279 (MQ=255) cacCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAg < 1:11013/282‑1 (MQ=255) aTCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACTCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGATCTGTTGTTTAGCTGAGCATCAAACCGCTCTAGCTCTTGTTGAGTAAATTGGGCAAGAAATGTTTTTTTAGGAAAGGACTGCCGAATTAACCCATTTGTGTTCTCTTTTGTTCCCAGCTGCCAAGTACTCTGAGGa > 1:1890109/1‑282 (MQ=18) aTCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTTTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGa > 2:1294159/1‑282 (MQ=255) aTCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACAAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGa > 2:1891209/1‑282 (MQ=255) gAAATAAGTAAGCTAAGGAAAAAGTTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTGAATGCAACACCCCTTTCAATTATCGCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGCCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCg < 1:200929/282‑1 (MQ=255) aTACGTAAACTGAGGAAAAAGCTACCACGGATTGAAAATGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTGTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATAGTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAg < 1:1476995/282‑1 (MQ=255) tAAGCTGGGGAAAAAGCTACAAAGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTATTTCGGTTTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTATAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTa < 1:1879613/282‑1 (MQ=255) aaGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTccc > 1:1006026/1‑249 (MQ=255) aaGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTccc < 2:1006026/249‑1 (MQ=255) aaGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTa < 2:214862/281‑1 (MQ=255) cTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAAc > 2:28690/1‑281 (MQ=255) aGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTa > 1:326272/1‑282 (MQ=255) aGGAAAAAGCTAAAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTATTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACAGCAGAATTAGCCAATTTGTATTCTCATTTATTCCCAGCTGCCAAGGACTCTGAGGATCGCCGAAGTAAACTTTa > 1:1851868/1‑282 (MQ=255) gAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTACATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTaa > 1:1087180/1‑281 (MQ=255) aaaGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGc < 1:1294159/281‑1 (MQ=255) aGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCg > 1:1652403/1‑260 (MQ=255) aGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCg < 2:1652403/260‑1 (MQ=255) cAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCGCTTTCGGTATTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCCAGTTCATGTTGACTATATTGGGCAAGACATGTCTTTTTAGGAAAGTAATGCCGAATTAGCCCAATTGTGTTCTCATTTGATCCCCGCTGCCAAGGACTCTGAGGATAGCGGAAGTAAACTTTAACGCCGGTGCTg > 2:1329243/1‑282 (MQ=255) gagtGAAATGTCGAATGCAATATTAAAAAGGGTACGGTACATTCAAACTGTCAAGGCAAAACCCCTTTGAATTATCTCTTTCGGTGTGTTGAACTTCAGTTTCTTTCTCGGGCTGTTGTTTATCTGGGCAGTCACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGt < 1:1872435/279‑1 (MQ=11) aTTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTa < 2:325171/282‑1 (MQ=255) aTTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTACCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTa < 1:160817/282‑1 (MQ=255) aTTGAAAAGAAGAATTAAATAATAAAAAGGCTACTGTAGATTCAATCTATCAATAGAACACCCCTTTCGATTGTCTCTTTCGGGGTTTTGAACTTGAGTGTCTTTCTCGGTCTGTTGATTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTa < 1:1636061/282‑1 (MQ=11) ggAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTATTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTa < 2:627870/281‑1 (MQ=255) ggAGAATGAAATAGTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCCATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGGCATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTGCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTa < 2:1644043/281‑1 (MQ=255) gagaATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGAAGAAGTAAACTTTAACCCGGGTGCTTACAGTAAATTCTAg > 1:1361709/1‑281 (MQ=255) agaATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGa > 2:403898/1‑281 (MQ=39) aaTGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGt > 2:740404/1‑282 (MQ=38) atcctgaattttaacaggttgaaTTGAAACTGTCAATGCAACACCCCCTTCAATTATCTCTTTCGGTGTTTTGAACTTCATTGTCTTTCTTGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGGGTGTATTGGGCAAGACATGTCTATTTAGGAAACTACTGCCGAATTATCCCATTTGTGTTCTCATATGTTCCCCGCAGCCAAGGACTCTGAGAATCGCAGAAGTAAACTTTAACGCCGGTTGTGACAGTAAATTCTAGATGTCTGGc < 1:1459322/260‑1 (MQ=11) atatTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGTCTGGc < 2:1154603/281‑1 (MQ=35) atatTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAAGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGTCTGGc < 2:976439/281‑1 (MQ=25) tatTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTTTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTCGTTCATGTTGAGTATATTGGGCAAGACATGTC‑TTTTAGTAAAGTACTGCTGAATTCGCCCCTTTGGGTTCTCATTTGTTCCCCGCTGCCAAGAACTCTGAGGATCGCAGAAGTAAACTTTAACGACGGTGCTGACAGTAACTTCTAGCTGTCTGGCCa > 2:994043/1‑281 (MQ=11) atTAAAAAGGCTACTTTAGAGTCAATCTGTCAATGCAAAACCCCTTTCAATTATCTCTTTCGGTGTTTTTAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGTCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGTCTGGCCAg < 1:1772413/282‑1 (MQ=19) atTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGTCTGGcc < 1:28690/280‑1 (MQ=35) atTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGTCTGGCCAg < 1:475896/282‑1 (MQ=35) atTAAAAAAGTTACTGTGGATTCAAGCTGTCAATGAATCAACCCTTTCAATTATCTCTTTCGGTTGTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGGTTAGCTGAGCAGCAACCTGAACTAGTTCATGTTTCGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAAGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGTCTGGCCAg < 1:626507/282‑1 (MQ=11) aaaaGGCTACTGTAGATTCAATCTGTCAATGCAACACACCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGAAGCAACTAGCTCTAGTTCATGTTGAGTATATTGTGCAAGACATGTCTTTTTAGGAAAGTACTGCCGACTTAGCACATTTGCGTTCTCATTTGTTCCACGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCAGGTTCTGACAGTAAATTCTAGATGTCTGGCCattacc > 1:1179496/1‑277 (MQ=11) aaaaGGCGACTGTTCATTCAACCTTGCAATGCACCACCCCTTTCACTTATCTCTTTGGTTTTTTTTAACTTCAGTTTCTTTTTCGGTCTATTGTTTTGCTGAGCAGCAACCAGTTCTAGTTCATGTTGAGTATATTTGGCAAGACATGGC‑TTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGTTGATCGCATCAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGTCTGGCCAGTTCCa < 1:994043/282‑1 (MQ=11) aaaGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTACATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGTCTGGCCAGTTCCa < 2:1087180/282‑1 (MQ=18) gctgcttgagatttcatCCGTAAATGCAACACCCCTTTTATCTGTATCTGTCGGTGTTTTGAACTTCAGTGGCGTTCTCGGTCTGTTGGTGAGCTGAGCAGCAACCATATCGAGGTAATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGTGAGTACTGCCGAATTAGCCCATTGGTGTTCTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggttctccagtggcttctgtttctatcagctgtccctcctgttcagctac > 1:1997009‑M2/9‑186 (MQ=255) gCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGTCTGGCCAGTTCCATTc > 2:1324747/1‑281 (MQ=31) cTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGTCTGGCCAGTTCCATTCct < 1:1471440/282‑1 (MQ=31) cTACTGGAGTTTCCATCTGTCAATGCAACACCCCTTTCAATTATCTCGTTCGGTGTTGTGAACTTCAGTGTCTTTTTCGGTCGGTTGGTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTTAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTATCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACTGTAAATTCTAGATGTCTGGCCAGTTCCATTCct < 1:23474/282‑1 (MQ=11) tccTGTAGATTCCATCTGTCAATGCAACACCCCCTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCATCAACCAGATCTAGCTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCAGTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGGTCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGTCTGGCCAGTTCCATTCctc < 2:1329668/280‑1 (MQ=2) cTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgccaactta < 2:1143358‑M2/187‑19 (MQ=255) cTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgccaactta > 1:1143358‑M2/1‑169 (MQ=255) tCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgccaacttactgattt > 1:515279‑M2/1‑166 (MQ=255) tCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgccaacttactgattt < 2:515279‑M2/191‑26 (MQ=255) acCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgccaacttactgatt < 2:40016‑M2/180‑25 (MQ=255) acCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgccaacttactgatt > 1:40016‑M2/1‑156 (MQ=255) cAGTGTCTTTCTCGGTCTGTTGTTTAGCTGGGCAGCAACCAAATCTCGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTTTTCGCggtgatgccgccaacttactgatttagtgtatgatgctgtttttgaggttctccagtggtttctttttctatcagacgtccctcctgttcagctactgccggggtggttgttaacggctaaagcattgccggcaccactcgctatctctgccttcaccgcct < 1:1963846‑M2/282‑163 (MQ=255) ttCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgccaacttactgatt < 1:639432‑M2/136‑25 (MQ=255) ttCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgccaacttactgatt > 2:639432‑M2/1‑112 (MQ=255) ggTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgccaacttactgatt > 1:1859655‑M2/1‑107 (MQ=255) ggTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgccaacttactgatt < 2:1859655‑M2/131‑25 (MQ=255) cttagcagcAACCAAATCTAGTTCATGTTGAGTAGAATGGGCAAGACATGTTATGTGAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCAATTATTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACTCCGGTGCGGACAGTAAATTCTGGATGTCTGGCCAGTTCCATTCCTCAGTCCCATGTCAGTGATTTTCTGAGTTCTGACGGTAAACTCAGGAATTTGTCGGTAAGAGCCTGATTTACTGATACAGAATCTTGGccccg < 1:835351/279‑2 (MQ=1) tgagaaaCCAGATCTAGTTTATGTTGAGTATATTGGTCAAGAAATGTTTTTTTCTGAAATTGCTGCCCAATTAGCCCATTTGTGTTCTCCTCTGTTCCCCTCTGCCTAGTACGCTGAGGTTCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGCTGTCTAGCCAGTTTCATTCCTCTGTCCCATGTCAGTGATTTTCTGAGTTCTGACGGTAAACTCACGAACTTGTCGGTCAGCGCTTGATTTACTGAGACAGAATCTTTGCCCCCGAGt < 1:398090/277‑1 (MQ=1) caACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgccaactta > 2:614755‑M2/1‑85 (MQ=255) caACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgccaactta < 1:614755‑M2/103‑19 (MQ=255) gTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgccaacttactgatttagtgtatga > 1:1416785‑M2/1‑73 (MQ=255) gTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgccaacttactgatttagtgtatga < 2:1416785‑M2/107‑35 (MQ=255) tcctGTTGATGATATTGGGCAATACATGTCTTTTTAGGAAAGTACTGCCGAATTCGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGTCTGGCCAGTTCCATTCCTCTGTCCCATGTCAGTGATTTTCTGAGTTCTGACGGTAAACTCAGGAATTTGTCGGTAAGAGc < 1:1170575/227‑1 (MQ=0) tGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgctaacttactgatttagtgtaagatggagtttttgacgttctccagtggcttctgtttctatccgctgtccctcctgttcagctactgacggggtcgtccgtaacggcaacagcactgcccgacagcaacgctatctctgctcgtacttcggtaaaaccttgcaacgccccttcccttacactgctcctcaacccggtaaccac < 1:1939836‑M2/282‑215 (MQ=255) ggttttttggCAAGACATGTCTTTTTACGAAAGTACTGCCGAATTAGCCCATTGTTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTTGATGTCTGGCCAGTTCCATTCCTCTGTCCCATGTCAGTGATTTTCTGAGTTCTGACGGTAAACTCAGGAATTTGTCGGTAAGAGCCTGATTTACTGAGACAGAATCTTTGCCCCTGAGTCTAAGGATGATCGTATAACGTGAtttt < 1:1016308/274‑1 (MQ=0) atgttGGGCAAGACACGTCTTTTGATGTACATACTGCCGAATTAGCCCATTTGTGTTCCCATTTGTGCCCCGCTGCCAAGGACTCTGACGATCGCGGAAGTAAACTTTAACGCCGGTGCTGACAGTAAAATCTAGATGTCTCGCTAGTTCCATTCCTCTGTCCCACGTCAGTGATTATCTGAGTTCTGACGGTAAACTCAGGAACTTGTCGGTAAGAGCCTGATTTACTTATACAGAATCTTTGCCCCTGAGTCTCAGGATGATCGTATAACGTGATTTTCg < 1:1886005/279‑1 (MQ=1) acaTTTGTGGTCTCggtgattctggcaacttactgatttggtgcatggtggtgtttttgaggttcttcagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggttcgtaacggcaaaagcactgccgaacatcagcgctatctctgcgctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatcatggatatggccatgaatggcgttggatgccgggcaaccgcccg > 1:864050‑M2/2‑14 (MQ=255) tcggtgatgctgccaacttactgaattagtgtatgatggtgtttttgaggtgctccagtggcttctatttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcactgcaggacatcagcgctatctctgctctccctgccgtaaaacttggcaactgccgttcacttacaccgcttctccacccggtacgcaccagaaaatcattgatatggccatgaatggcgttggatgccgggcaacacaccgcattatgggcgtt < 1:838935‑M2/282‑281 (MQ=255) | TCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGTCTGGCCAGTTCCATTCCTCTGTCCCATGTCAGTGATTTTCTGAGTTCTGACGGTAAACTCAGGAATTTGTCGGTAAGAGCCTGATTTACTGAGACAGAATCTTTGCCCCTGAGTCTAAGGATGATCGTATAACGTGATTTTCGGTCTACAAGTGTGGCTATATGAGAGTTTTTTGTACCTGAGACTAAATCGCCCTCCCAA > NC_000913/4507369‑4507920 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |